Last updated on 2025-07-25 13:51:02 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/113s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.499, system: 0.042, elapsed: 2.259 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.936, system: 0.097, elapsed: 13.948 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.017, elapsed: 0.329 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.697, system: 0.194, elapsed: 6.239 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.004, elapsed: 0.292 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.038, system: 0.377, elapsed: 24.014 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.471, system: 0.036, elapsed: 2.669 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.010, system: 0.090, elapsed: 14.048 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.182, system: 0.013, elapsed: 0.274 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.629, system: 0.170, elapsed: 5.214 seconds]
Computing values for grid cells...
... done. [user: 0.160, system: 0.003, elapsed: 0.230 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.983, system: 0.334, elapsed: 23.261 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.495, system: 0.028, elapsed: 2.083 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.949, system: 0.067, elapsed: 13.056 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.011, elapsed: 0.259 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.662, system: 0.177, elapsed: 5.225 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.004, elapsed: 0.260 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.135, system: 0.204, elapsed: 1.071 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.203, system: 0.512, elapsed: 22.876 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.428, system: 0.032, elapsed: 1.553 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.999, system: 0.108, elapsed: 11.307 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.014, elapsed: 0.299 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.661, system: 0.217, elapsed: 5.416 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.006, elapsed: 0.262 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.315, system: 0.587, elapsed: 16.498 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.397, system: 0.996, elapsed: 36.216 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/107s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.582, system: 0.053, elapsed: 2.548 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.004, system: 0.091, elapsed: 14.101 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.015, elapsed: 0.302 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.578, system: 0.185, elapsed: 5.513 seconds]
Computing values for grid cells...
... done. [user: 0.159, system: 0.004, elapsed: 0.203 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.034, system: 0.367, elapsed: 23.435 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.533, system: 0.041, elapsed: 2.420 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.995, system: 0.068, elapsed: 13.114 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.013, elapsed: 0.285 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.634, system: 0.178, elapsed: 5.133 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.003, elapsed: 0.222 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.047, system: 0.331, elapsed: 22.108 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.508, system: 0.028, elapsed: 2.115 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.944, system: 0.073, elapsed: 10.921 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.180, system: 0.010, elapsed: 0.254 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.415, system: 0.156, elapsed: 4.065 seconds]
Computing values for grid cells...
... done. [user: 0.160, system: 0.002, elapsed: 0.200 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.055, system: 0.204, elapsed: 0.883 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.877, system: 0.511, elapsed: 19.295 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.530, system: 0.035, elapsed: 2.143 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.958, system: 0.092, elapsed: 11.705 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.016, elapsed: 0.265 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.621, system: 0.214, elapsed: 5.803 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.006, elapsed: 0.237 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.039, system: 0.579, elapsed: 13.499 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.150, system: 0.975, elapsed: 34.555 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64