Last updated on 2025-07-25 00:50:02 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [81s/128s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.510, system: 0.049, elapsed: 2.595 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.031, system: 0.128, elapsed: 14.533 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.015, elapsed: 0.307 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.730, system: 0.207, elapsed: 6.261 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.005, elapsed: 0.302 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.174, system: 0.428, elapsed: 24.908 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.501, system: 0.041, elapsed: 2.459 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.889, system: 0.083, elapsed: 12.831 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.013, elapsed: 0.259 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.837, system: 0.241, elapsed: 5.789 seconds]
Computing values for grid cells...
... done. [user: 0.159, system: 0.004, elapsed: 0.307 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.107, system: 0.405, elapsed: 22.490 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.904, system: 0.152, elapsed: 4.107 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.222, system: 0.307, elapsed: 16.425 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.023, elapsed: 0.358 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.049, system: 0.366, elapsed: 6.564 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.013, elapsed: 0.269 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.164, system: 0.213, elapsed: 1.190 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.343, system: 1.122, elapsed: 30.059 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.477, system: 0.035, elapsed: 1.903 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.989, system: 0.086, elapsed: 14.160 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.012, elapsed: 0.295 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.825, system: 0.185, elapsed: 6.456 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.006, elapsed: 0.311 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.236, system: 0.462, elapsed: 17.733 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.553, system: 0.817, elapsed: 41.865 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/121s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.517, system: 0.043, elapsed: 2.305 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.858, system: 0.082, elapsed: 13.481 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.014, elapsed: 0.300 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.589, system: 0.172, elapsed: 5.504 seconds]
Computing values for grid cells...
... done. [user: 0.160, system: 0.004, elapsed: 0.307 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.860, system: 0.332, elapsed: 22.747 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.492, system: 0.027, elapsed: 2.360 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.021, system: 0.145, elapsed: 15.303 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.013, elapsed: 0.275 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.778, system: 0.209, elapsed: 6.150 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.010, elapsed: 0.270 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.188, system: 0.429, elapsed: 25.227 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.578, system: 0.054, elapsed: 2.813 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.055, system: 0.124, elapsed: 13.341 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.009, elapsed: 0.196 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.565, system: 0.166, elapsed: 5.612 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.003, elapsed: 0.263 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.090, system: 0.219, elapsed: 1.440 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.263, system: 0.610, elapsed: 24.552 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.541, system: 0.036, elapsed: 2.911 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.081, system: 0.097, elapsed: 14.500 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.011, elapsed: 0.245 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.563, system: 0.168, elapsed: 5.213 seconds]
Computing values for grid cells...
... done. [user: 0.161, system: 0.002, elapsed: 0.193 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.199, system: 0.455, elapsed: 16.466 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.372, system: 0.795, elapsed: 40.542 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64