CRAN Package Check Results for Maintainer ‘Sylvain Piry <sylvain.piry at inrae.fr>’

Last updated on 2025-07-25 00:50:02 CEST.

Package ERROR OK
mapi 2 11

Package mapi

Current CRAN status: ERROR: 2, OK: 11

Version: 1.1.4
Check: tests
Result: ERROR Running ‘testthat.R’ [81s/128s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(mapi) > > test_check("mapi") Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Estimated halfwidth: 286.835888 Estimated halfwidth: 143.417944 Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE Building local cartesian grid... ... 1071 cells Building worldwide lat/lon grid... Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084 ... 2432 cells Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.510, system: 0.049, elapsed: 2.595 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.031, system: 0.128, elapsed: 14.533 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.187, system: 0.015, elapsed: 0.307 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.730, system: 0.207, elapsed: 6.261 seconds] Computing values for grid cells... ... done. [user: 0.167, system: 0.005, elapsed: 0.302 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 15.174, system: 0.428, elapsed: 24.908 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.501, system: 0.041, elapsed: 2.459 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 8.889, system: 0.083, elapsed: 12.831 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.184, system: 0.013, elapsed: 0.259 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.837, system: 0.241, elapsed: 5.789 seconds] Computing values for grid cells... ... done. [user: 0.159, system: 0.004, elapsed: 0.307 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 15.107, system: 0.405, elapsed: 22.490 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.904, system: 0.152, elapsed: 4.107 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.222, system: 0.307, elapsed: 16.425 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.195, system: 0.023, elapsed: 0.358 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 4.049, system: 0.366, elapsed: 6.564 seconds] Computing values for grid cells... ... done. [user: 0.175, system: 0.013, elapsed: 0.269 seconds] Starting 4 permutations... ... parallelized over 2 cores ... 1 2 3 4 ... computing probabilities from permuted values ... ... done. [user: 1.164, system: 0.213, elapsed: 1.190 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 17.343, system: 1.122, elapsed: 30.059 seconds] Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.477, system: 0.035, elapsed: 1.903 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 8.989, system: 0.086, elapsed: 14.160 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.188, system: 0.012, elapsed: 0.295 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.825, system: 0.185, elapsed: 6.456 seconds] Computing values for grid cells... ... done. [user: 0.174, system: 0.006, elapsed: 0.311 seconds] Starting 50 permutations... ... serially ... | | | 0% | |== | 2% | |=== | 4% | |===== | 6% | |====== | 8% | |======== | 10% | |========== | 12% | |=========== | 14% | |============= | 16% | |============== | 18% | |================ | 20% | |================== | 22% | |=================== | 24% | |===================== | 26% | |====================== | 28% | |======================== | 30% | |========================== | 32% | |=========================== | 34% | |============================= | 36% | |============================== | 38% | |================================ | 40% | |================================== | 42% | |=================================== | 44% | |===================================== | 46% | |====================================== | 48% | |======================================== | 50% | |========================================== | 52% | |=========================================== | 54% | |============================================= | 56% | |============================================== | 58% | |================================================ | 60% | |================================================== | 62% | |=================================================== | 64% | |===================================================== | 66% | |====================================================== | 68% | |======================================================== | 70% | |========================================================== | 72% | |=========================================================== | 74% | |============================================================= | 76% | |============================================================== | 78% | |================================================================ | 80% | |================================================================== | 82% | |=================================================================== | 84% | |===================================================================== | 86% | |====================================================================== | 88% | |======================================================================== | 90% | |========================================================================== | 92% | |=========================================================================== | 94% | |============================================================================= | 96% | |============================================================================== | 98% | |================================================================================| 100% ... computing probabilities from permuted values ... ... done. [user: 10.236, system: 0.462, elapsed: 17.733 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 25.553, system: 0.817, elapsed: 41.865 seconds] Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ... ... 1 upper-tail and 3 lower-tail significant areas returned Building local cartesian grid... ... 1045 cells [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ──────────────────────── sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`). `actual`: 963429.6 `expected`: 963339.6 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] Error: Test failures Execution halted Flavor: r-release-macos-x86_64

Version: 1.1.4
Check: tests
Result: ERROR Running ‘testthat.R’ [79s/121s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(mapi) > > test_check("mapi") Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Estimated halfwidth: 286.835888 Estimated halfwidth: 143.417944 Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE Building local cartesian grid... ... 1071 cells Building worldwide lat/lon grid... Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084 ... 2432 cells Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.517, system: 0.043, elapsed: 2.305 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 8.858, system: 0.082, elapsed: 13.481 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.185, system: 0.014, elapsed: 0.300 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.589, system: 0.172, elapsed: 5.504 seconds] Computing values for grid cells... ... done. [user: 0.160, system: 0.004, elapsed: 0.307 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 14.860, system: 0.332, elapsed: 22.747 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.492, system: 0.027, elapsed: 2.360 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.021, system: 0.145, elapsed: 15.303 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.185, system: 0.013, elapsed: 0.275 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.778, system: 0.209, elapsed: 6.150 seconds] Computing values for grid cells... ... done. [user: 0.172, system: 0.010, elapsed: 0.270 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 15.188, system: 0.429, elapsed: 25.227 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.578, system: 0.054, elapsed: 2.813 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.055, system: 0.124, elapsed: 13.341 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.186, system: 0.009, elapsed: 0.196 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.565, system: 0.166, elapsed: 5.612 seconds] Computing values for grid cells... ... done. [user: 0.165, system: 0.003, elapsed: 0.263 seconds] Starting 4 permutations... ... parallelized over 2 cores ... 1 2 3 4 ... computing probabilities from permuted values ... ... done. [user: 1.090, system: 0.219, elapsed: 1.440 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 16.263, system: 0.610, elapsed: 24.552 seconds] Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.541, system: 0.036, elapsed: 2.911 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.081, system: 0.097, elapsed: 14.500 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.186, system: 0.011, elapsed: 0.245 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.563, system: 0.168, elapsed: 5.213 seconds] Computing values for grid cells... ... done. [user: 0.161, system: 0.002, elapsed: 0.193 seconds] Starting 50 permutations... ... serially ... | | | 0% | |== | 2% | |=== | 4% | |===== | 6% | |====== | 8% | |======== | 10% | |========== | 12% | |=========== | 14% | |============= | 16% | |============== | 18% | |================ | 20% | |================== | 22% | |=================== | 24% | |===================== | 26% | |====================== | 28% | |======================== | 30% | |========================== | 32% | |=========================== | 34% | |============================= | 36% | |============================== | 38% | |================================ | 40% | |================================== | 42% | |=================================== | 44% | |===================================== | 46% | |====================================== | 48% | |======================================== | 50% | |========================================== | 52% | |=========================================== | 54% | |============================================= | 56% | |============================================== | 58% | |================================================ | 60% | |================================================== | 62% | |=================================================== | 64% | |===================================================== | 66% | |====================================================== | 68% | |======================================================== | 70% | |========================================================== | 72% | |=========================================================== | 74% | |============================================================= | 76% | |============================================================== | 78% | |================================================================ | 80% | |================================================================== | 82% | |=================================================================== | 84% | |===================================================================== | 86% | |====================================================================== | 88% | |======================================================================== | 90% | |========================================================================== | 92% | |=========================================================================== | 94% | |============================================================================= | 96% | |============================================================================== | 98% | |================================================================================| 100% ... computing probabilities from permuted values ... ... done. [user: 10.199, system: 0.455, elapsed: 16.466 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 25.372, system: 0.795, elapsed: 40.542 seconds] Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ... ... 1 upper-tail and 3 lower-tail significant areas returned Building local cartesian grid... ... 1045 cells [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ──────────────────────── sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`). `actual`: 963429.6 `expected`: 963339.6 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] Error: Test failures Execution halted Flavor: r-oldrel-macos-x86_64