Last updated on 2026-01-27 03:48:12 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [111s/537s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.690, system: 0.058, elapsed: 5.173 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.672, system: 0.169, elapsed: 26.639 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.222, system: 0.018, elapsed: 1.230 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.124, system: 0.887, elapsed: 161.442 seconds]
Computing values for grid cells...
... done. [user: 0.178, system: 0.004, elapsed: 0.526 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.471, system: 1.159, elapsed: 196.664 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.575, system: 0.035, elapsed: 4.625 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.508, system: 0.064, elapsed: 23.766 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.227, system: 0.018, elapsed: 1.235 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.139, system: 0.915, elapsed: 178.472 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.004, elapsed: 0.390 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.205, system: 1.058, elapsed: 209.809 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.534, system: 0.031, elapsed: 3.462 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.555, system: 0.051, elapsed: 19.978 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.314, system: 0.016, elapsed: 1.282 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.526, system: 1.006, elapsed: 59.021 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.007, elapsed: 0.206 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.256, system: 0.356, elapsed: 1.022 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 22.130, system: 1.510, elapsed: 86.180 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.656, system: 0.053, elapsed: 1.663 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.563, system: 0.156, elapsed: 10.193 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.297, system: 0.025, elapsed: 0.259 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 9.375, system: 0.994, elapsed: 8.251 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.004, elapsed: 0.189 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 16.819, system: 1.231, elapsed: 13.038 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 38.776, system: 2.516, elapsed: 34.342 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [87s/234s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.601, system: 0.040, elapsed: 4.121 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.662, system: 0.060, elapsed: 24.983 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.216, system: 0.017, elapsed: 0.652 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.382, system: 0.428, elapsed: 13.190 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.004, elapsed: 0.410 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.600, system: 0.571, elapsed: 44.831 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.603, system: 0.030, elapsed: 4.019 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.674, system: 0.078, elapsed: 25.899 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.194, system: 0.013, elapsed: 0.621 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.325, system: 0.417, elapsed: 13.042 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.003, elapsed: 0.450 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.523, system: 0.562, elapsed: 45.554 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.595, system: 0.032, elapsed: 4.535 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.685, system: 0.076, elapsed: 25.277 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.014, elapsed: 0.586 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.388, system: 0.408, elapsed: 12.870 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.003, elapsed: 0.463 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.197, system: 0.286, elapsed: 2.094 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.909, system: 0.843, elapsed: 47.628 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.639, system: 0.035, elapsed: 4.215 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.607, system: 0.066, elapsed: 26.266 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.206, system: 0.014, elapsed: 0.570 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.308, system: 0.410, elapsed: 13.469 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.004, elapsed: 0.460 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 11.030, system: 0.546, elapsed: 34.058 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.645, system: 1.097, elapsed: 80.852 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64