CRAN Package Check Results for Maintainer ‘Sylvain Piry <sylvain.piry at inrae.fr>’

Last updated on 2025-07-25 13:51:02 CEST.

Package ERROR OK
mapi 2 11

Package mapi

Current CRAN status: ERROR: 2, OK: 11

Version: 1.1.4
Check: tests
Result: ERROR Running ‘testthat.R’ [79s/113s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(mapi) > > test_check("mapi") Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Estimated halfwidth: 286.835888 Estimated halfwidth: 143.417944 Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE Building local cartesian grid... ... 1071 cells Building worldwide lat/lon grid... Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084 ... 2432 cells Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.499, system: 0.042, elapsed: 2.259 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 8.936, system: 0.097, elapsed: 13.948 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.189, system: 0.017, elapsed: 0.329 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.697, system: 0.194, elapsed: 6.239 seconds] Computing values for grid cells... ... done. [user: 0.165, system: 0.004, elapsed: 0.292 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 15.038, system: 0.377, elapsed: 24.014 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.471, system: 0.036, elapsed: 2.669 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.010, system: 0.090, elapsed: 14.048 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.182, system: 0.013, elapsed: 0.274 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.629, system: 0.170, elapsed: 5.214 seconds] Computing values for grid cells... ... done. [user: 0.160, system: 0.003, elapsed: 0.230 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 14.983, system: 0.334, elapsed: 23.261 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.495, system: 0.028, elapsed: 2.083 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 8.949, system: 0.067, elapsed: 13.056 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.184, system: 0.011, elapsed: 0.259 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.662, system: 0.177, elapsed: 5.225 seconds] Computing values for grid cells... ... done. [user: 0.163, system: 0.004, elapsed: 0.260 seconds] Starting 4 permutations... ... parallelized over 2 cores ... 1 2 3 4 ... computing probabilities from permuted values ... ... done. [user: 1.135, system: 0.204, elapsed: 1.071 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 16.203, system: 0.512, elapsed: 22.876 seconds] Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.428, system: 0.032, elapsed: 1.553 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 8.999, system: 0.108, elapsed: 11.307 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.188, system: 0.014, elapsed: 0.299 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.661, system: 0.217, elapsed: 5.416 seconds] Computing values for grid cells... ... done. [user: 0.164, system: 0.006, elapsed: 0.262 seconds] Starting 50 permutations... ... serially ... | | | 0% | |== | 2% | |=== | 4% | |===== | 6% | |====== | 8% | |======== | 10% | |========== | 12% | |=========== | 14% | |============= | 16% | |============== | 18% | |================ | 20% | |================== | 22% | |=================== | 24% | |===================== | 26% | |====================== | 28% | |======================== | 30% | |========================== | 32% | |=========================== | 34% | |============================= | 36% | |============================== | 38% | |================================ | 40% | |================================== | 42% | |=================================== | 44% | |===================================== | 46% | |====================================== | 48% | |======================================== | 50% | |========================================== | 52% | |=========================================== | 54% | |============================================= | 56% | |============================================== | 58% | |================================================ | 60% | |================================================== | 62% | |=================================================== | 64% | |===================================================== | 66% | |====================================================== | 68% | |======================================================== | 70% | |========================================================== | 72% | |=========================================================== | 74% | |============================================================= | 76% | |============================================================== | 78% | |================================================================ | 80% | |================================================================== | 82% | |=================================================================== | 84% | |===================================================================== | 86% | |====================================================================== | 88% | |======================================================================== | 90% | |========================================================================== | 92% | |=========================================================================== | 94% | |============================================================================= | 96% | |============================================================================== | 98% | |================================================================================| 100% ... computing probabilities from permuted values ... ... done. [user: 10.315, system: 0.587, elapsed: 16.498 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 25.397, system: 0.996, elapsed: 36.216 seconds] Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ... ... 1 upper-tail and 3 lower-tail significant areas returned Building local cartesian grid... ... 1045 cells [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ──────────────────────── sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`). `actual`: 963429.6 `expected`: 963339.6 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] Error: Test failures Execution halted Flavor: r-release-macos-x86_64

Version: 1.1.4
Check: tests
Result: ERROR Running ‘testthat.R’ [78s/107s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(mapi) > > test_check("mapi") Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Estimated halfwidth: 286.835888 Estimated halfwidth: 143.417944 Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE Building local cartesian grid... ... 1071 cells Building worldwide lat/lon grid... Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084 ... 2432 cells Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.582, system: 0.053, elapsed: 2.548 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.004, system: 0.091, elapsed: 14.101 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.186, system: 0.015, elapsed: 0.302 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.578, system: 0.185, elapsed: 5.513 seconds] Computing values for grid cells... ... done. [user: 0.159, system: 0.004, elapsed: 0.203 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 15.034, system: 0.367, elapsed: 23.435 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.533, system: 0.041, elapsed: 2.420 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 8.995, system: 0.068, elapsed: 13.114 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.189, system: 0.013, elapsed: 0.285 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.634, system: 0.178, elapsed: 5.133 seconds] Computing values for grid cells... ... done. [user: 0.165, system: 0.003, elapsed: 0.222 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 15.047, system: 0.331, elapsed: 22.108 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.508, system: 0.028, elapsed: 2.115 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 8.944, system: 0.073, elapsed: 10.921 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.180, system: 0.010, elapsed: 0.254 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.415, system: 0.156, elapsed: 4.065 seconds] Computing values for grid cells... ... done. [user: 0.160, system: 0.002, elapsed: 0.200 seconds] Starting 4 permutations... ... parallelized over 2 cores ... 1 2 4 3 ... computing probabilities from permuted values ... ... done. [user: 1.055, system: 0.204, elapsed: 0.883 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 15.877, system: 0.511, elapsed: 19.295 seconds] Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.530, system: 0.035, elapsed: 2.143 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 8.958, system: 0.092, elapsed: 11.705 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.187, system: 0.016, elapsed: 0.265 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.621, system: 0.214, elapsed: 5.803 seconds] Computing values for grid cells... ... done. [user: 0.165, system: 0.006, elapsed: 0.237 seconds] Starting 50 permutations... ... serially ... | | | 0% | |== | 2% | |=== | 4% | |===== | 6% | |====== | 8% | |======== | 10% | |========== | 12% | |=========== | 14% | |============= | 16% | |============== | 18% | |================ | 20% | |================== | 22% | |=================== | 24% | |===================== | 26% | |====================== | 28% | |======================== | 30% | |========================== | 32% | |=========================== | 34% | |============================= | 36% | |============================== | 38% | |================================ | 40% | |================================== | 42% | |=================================== | 44% | |===================================== | 46% | |====================================== | 48% | |======================================== | 50% | |========================================== | 52% | |=========================================== | 54% | |============================================= | 56% | |============================================== | 58% | |================================================ | 60% | |================================================== | 62% | |=================================================== | 64% | |===================================================== | 66% | |====================================================== | 68% | |======================================================== | 70% | |========================================================== | 72% | |=========================================================== | 74% | |============================================================= | 76% | |============================================================== | 78% | |================================================================ | 80% | |================================================================== | 82% | |=================================================================== | 84% | |===================================================================== | 86% | |====================================================================== | 88% | |======================================================================== | 90% | |========================================================================== | 92% | |=========================================================================== | 94% | |============================================================================= | 96% | |============================================================================== | 98% | |================================================================================| 100% ... computing probabilities from permuted values ... ... done. [user: 10.039, system: 0.579, elapsed: 13.499 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 25.150, system: 0.975, elapsed: 34.555 seconds] Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ... ... 1 upper-tail and 3 lower-tail significant areas returned Building local cartesian grid... ... 1045 cells [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ──────────────────────── sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`). `actual`: 963429.6 `expected`: 963339.6 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] Error: Test failures Execution halted Flavor: r-oldrel-macos-x86_64