Last updated on 2025-12-24 09:49:44 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 13.18 | 244.11 | 257.29 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 10.10 | 257.52 | 267.62 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 25.00 | 289.70 | 314.70 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 27.00 | 350.69 | 377.69 | OK | |
| r-devel-windows-x86_64 | 1.1.4 | 22.00 | 186.00 | 208.00 | OK | |
| r-patched-linux-x86_64 | 1.1.4 | 15.29 | 246.27 | 261.56 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 13.77 | 256.04 | 269.81 | OK | |
| r-release-macos-arm64 | 1.1.4 | OK | ||||
| r-release-macos-x86_64 | 1.1.4 | 13.00 | 419.00 | 432.00 | ERROR | |
| r-release-windows-x86_64 | 1.1.4 | 21.00 | 187.00 | 208.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.4 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.4 | 13.00 | 624.00 | 637.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.1.4 | 24.00 | 242.00 | 266.00 | OK |
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [101s/306s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 2.025, system: 0.164, elapsed: 7.161 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.733, system: 0.704, elapsed: 32.046 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.036, elapsed: 0.634 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.555, system: 0.475, elapsed: 11.561 seconds]
Computing values for grid cells...
... done. [user: 0.198, system: 0.017, elapsed: 0.576 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.455, system: 1.780, elapsed: 55.148 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.908, system: 0.247, elapsed: 7.149 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.368, system: 0.451, elapsed: 50.988 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.223, system: 0.043, elapsed: 1.550 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.883, system: 0.653, elapsed: 21.751 seconds]
Computing values for grid cells...
... done. [user: 0.205, system: 0.023, elapsed: 0.729 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.320, system: 1.864, elapsed: 86.789 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.906, system: 0.119, elapsed: 6.897 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.497, system: 0.505, elapsed: 35.873 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.225, system: 0.038, elapsed: 0.661 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.658, system: 0.673, elapsed: 12.979 seconds]
Computing values for grid cells...
... done. [user: 0.192, system: 0.015, elapsed: 0.272 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
2 1 4 3
... computing probabilities from permuted values ...
... done. [user: 1.361, system: 0.399, elapsed: 1.828 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.669, system: 2.239, elapsed: 62.260 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 2.058, system: 0.201, elapsed: 3.904 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.113, system: 0.373, elapsed: 31.982 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.212, system: 0.033, elapsed: 0.804 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.551, system: 0.414, elapsed: 11.932 seconds]
Computing values for grid cells...
... done. [user: 0.210, system: 0.019, elapsed: 0.736 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 12.119, system: 1.153, elapsed: 33.233 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.111, system: 2.587, elapsed: 85.857 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [98s/437s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.783, system: 0.075, elapsed: 7.527 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.237, system: 0.291, elapsed: 42.141 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.208, system: 0.028, elapsed: 0.820 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.403, system: 0.426, elapsed: 21.398 seconds]
Computing values for grid cells...
... done. [user: 0.213, system: 0.018, elapsed: 0.897 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.590, system: 1.291, elapsed: 78.000 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.779, system: 0.070, elapsed: 6.705 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.180, system: 0.315, elapsed: 44.229 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.217, system: 0.037, elapsed: 0.982 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.417, system: 0.493, elapsed: 20.601 seconds]
Computing values for grid cells...
... done. [user: 0.191, system: 0.013, elapsed: 1.093 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.518, system: 1.409, elapsed: 78.105 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.822, system: 0.120, elapsed: 7.578 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.133, system: 0.287, elapsed: 47.939 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.219, system: 0.047, elapsed: 1.670 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.332, system: 0.511, elapsed: 22.608 seconds]
Computing values for grid cells...
... done. [user: 0.203, system: 0.028, elapsed: 0.899 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.295, system: 0.465, elapsed: 4.224 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.865, system: 1.977, elapsed: 90.085 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.863, system: 0.112, elapsed: 9.709 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.206, system: 0.329, elapsed: 51.054 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.213, system: 0.038, elapsed: 1.355 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.340, system: 0.576, elapsed: 29.166 seconds]
Computing values for grid cells...
... done. [user: 0.188, system: 0.013, elapsed: 1.148 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 12.110, system: 1.604, elapsed: 65.459 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 29.795, system: 3.185, elapsed: 164.946 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64