Metadata-Version: 2.4
Name: MDAnalysis
Version: 2.10.0
Summary: An object-oriented toolkit to analyze molecular dynamics trajectories.
Author-email: MDAnalysis Development Team <mdanalysis@numfocus.org>
Maintainer-email: MDAnalysis Core Developers <mdanalysis@numfocus.org>
License: ==========================================================================
        Licensing of the MDAnalysis library
        ==========================================================================
        
        The MDAnalyis library is packaged under the terms of the GNU Lesser
        General Public License version 3 or any later version (LGPLv3+).
        
        Developer contributions to the library are, unless otherwise stated,
        made under the GNU Lesser General Public License version 2.1 or any
        later version (LGPLv2.1+).
        
        The MDAnalysis library also includes external codes provided under licenses
        compatible with the terms of the GNU Lesser General Public License version
        3 or any later version (LGPLv3+). These are outlined under
        "Licenses of components of MDAnalysis".
        
        ==========================================================================
        Licenses of components of MDAnalysis
        ==========================================================================
        
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        ==========================================================================
        
                            GNU GENERAL PUBLIC LICENSE
                               Version 3, 29 June 2007
        
         Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
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        ==========================================================================
        
        Gromacs xdrfile library for reading XTC/TRR trajectories
          - lib/formats/src/xdrfile.c
          - lib/formats/src/xdrfile_xtc.c
          - lib/formats/src/xdrfile_trr.c
          - lib/formats/include/xdrfile.h
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          - lib/formats/include/xdrfile_trr.h
        
        Copyright (c) 2009-2014, Erik Lindahl & David van der Spoel
        All rights reserved.
        
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        ==========================================================================
        
        CatDCD is released under the UIUC Open Source License:
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        University of Illinois Open Source License
        Copyright 2003-2007 Theoretical and Computational Biophysics Group,
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                                University of Illinois at Urbana-Champaign
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        ==========================================================================
        
                         Biopython License Agreement
        
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        ==========================================================================
        
        transformations module
          - transformations.py
          - transformations.c
        
        Copyright (c) 2006, Christoph Gohlke
        Copyright (c) 2006-2010, The Regents of the University of California
        All rights reserved.
        
        Redistribution and use in source and binary forms, with or without
        modification, are permitted provided that the following conditions are met:
        
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        ==========================================================================
        
        pyqcprot (src/pyqcprot) is released under the following 'BSD 3-clause' licence:
        
        -----------------------------------------------------------------------------
        PyQCPROT
        
            Author(s) of Original Implementation:     
                          Douglas L. Theobald
                          Department of Biochemistry
                          MS 009
                          Brandeis University
                          415 South St
                          Waltham, MA  02453
                          USA
        
                          dtheobald@brandeis.edu
                          
                          Pu Liu
                          Johnson & Johnson Pharmaceutical Research and Development, L.L.C.
                          665 Stockton Drive
                          Exton, PA  19341
                          USA
        
                          pliu24@its.jnj.com
        
                          For the original code written in C see:
                          http://theobald.brandeis.edu/qcp/ 
        
        
            Author of Python Port:
                          Joshua L. Adelman
                          Department of Biological Sciences
                          University of Pittsburgh
                          Pittsburgh, PA 15260
                           
                          jla65@pitt.edu
        
         
            If you use this QCP rotation calculation method in a publication, please
            reference:
        
              Douglas L. Theobald (2005)
              "Rapid calculation of RMSD using a quaternion-based characteristic
              polynomial."
              Acta Crystallographica A 61(4):478-480.
        
              Pu Liu, Dmitris K. Agrafiotis, and Douglas L. Theobald (2010)
              "Fast determination of the optimal rotational matrix for macromolecular 
              superpositions."
              J. Comput. Chem. 31, 1561-1563. 
        
        
            Copyright (c) 2009-2010, Pu Liu and Douglas L. Theobald 
            Copyright (c) 2011       Joshua L. Adelman
            All rights reserved.
        
            Redistribution and use in source and binary forms, with or without modification, are permitted 
            provided that the following conditions are met:
        
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              conditions and the following disclaimer.
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            (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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        ==========================================================================
        
        DSSP module code for protein secondary structure assignment
         - analysis/dssp/pydssp_numpy.py
        
        MIT License
        
        Copyright (c) 2022 Shintaro Minami
        
        Permission is hereby granted, free of charge, to any person obtaining a copy
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        ==========================================================================
        
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