structure_data.hpp File Reference

#include "errors.hpp"
#include <string>
#include <vector>
#include <algorithm>
#include <stdint.h>
#include <sstream>
#include <limits>
#include <msgpack.hpp>
#include <iostream>
#include <iomanip>

Go to the source code of this file.

Data Structures
struct	mmtf::GroupType
	Group (residue) level data store. More...
struct	mmtf::Entity
	Entity type. More...
struct	mmtf::Transform
	Transformation definition for a set of chains. More...
struct	mmtf::BioAssembly
	Data store for the biological assembly annotation. More...
struct	mmtf::StructureData
	Top level MMTF data container. More...

Namespaces
namespace	mmtf

Macros
#define	MMTF_SPEC_VERSION_MAJOR   1
	MMTF spec version which this library implements.
#define	MMTF_SPEC_VERSION_MINOR   1

Functions
std::string	mmtf::getVersionString ()
	Get string representation of MMTF spec version implemented here.
bool	mmtf::isVersionSupported (const std::string &version_string)
	Check if version is supported (minor revisions ok, major ones not).
template<typename T>
T	mmtf::getDefaultValue ()
	Get default value for given type.
template<typename T>
bool	mmtf::isDefaultValue (const T &value)
template<typename T>
bool	mmtf::isDefaultValue (const std::vector< T > &value)
template<>
bool	mmtf::isDefaultValue (const std::string &value)
template<>
bool	mmtf::isDefaultValue (const std::map< std::string, msgpack::object > &value)
template<typename T>
void	mmtf::setDefaultValue (T &value)
	Set default value to given type.
bool	mmtf::is_polymer (const unsigned int chain_index, const std::vector< Entity > &entity_list)
	Check if chain is a polymer chain.
bool	mmtf::is_hetatm (const char *type)
	Check if group type consists of HETATM atoms.
bool	mmtf::is_hetatm (const unsigned int chain_index, const std::vector< Entity > &entity_list, const GroupType &group_type)
	Preferred way to check if group consists of hetatm atoms.
template<>
bool	mmtf::isDefaultValue (const std::string &value)
template<>
bool	mmtf::isDefaultValue (const std::map< std::string, msgpack::object > &value)

Macro Definition Documentation

MMTF_SPEC_VERSION_MAJOR

#define MMTF_SPEC_VERSION_MAJOR   1

MMTF spec version which this library implements.

MMTF_SPEC_VERSION_MINOR

#define MMTF_SPEC_VERSION_MINOR   1