swash 2.0.0
Breaking changes
(Non-backwards compatible)
- Analyses are conducted via
infpan objects rather than
sbm objects
- Former method
plot_regions() for class sbm
is replaced by generic method plot() for
infpan objects
- Former methods
growth() and
growth_initial() for sbm objects are are now
methods for the infpan class
- Former function
plot_breakpoints() is replaced by
function breaks_growth() and the corresponding
plot() method
New features
- Importing infections panel data via
load_infections_paneldata(), which creates and instance of
the new class infpan
- Calculation of spread indicators for
infpan objects
such as incidence and effective reproduction number \(R_t\)
- Function
hawkes_growth() for parametrization of a
Hawkes process equation for infections
- Method
growth_hawkes() for parametrization of Hawkes
process equations based on infpan objects
- Additional NLS estimation in function
exponential_growth()
- Option to add a constant (if values of y equal to zero occur) in
functions
logistic_growth() and
exponential_growth(), as well as in methods
growth(infpan) and growth_initial(infpan)
Bugfixes
- Functions
metrics(), binary_metrics() and
binary_metrics_glm() now return results invisible
- Check for equal length of input vectors in
logistic_growth()