Last updated on 2026-01-27 09:50:17 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| bregr | 13 | ||
| contribution | 13 | ||
| ezcox | 13 | ||
| ggpolar | 13 | ||
| metawho | 13 | ||
| regport | 13 | ||
| sigminer | 1 | 12 | |
| tinyscholar | 13 | ||
| UCSCXenaShiny | 3 | 10 | |
| UCSCXenaTools | 13 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, NOTE: 12
Version: 2.3.1
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘show_group_enrichment.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 2.3.1
Check: examples
Result: ERROR
Running examples in ‘sigminer-Ex.R’ failed
The error most likely occurred in:
> ### Name: sigprofiler
> ### Title: Extract Signatures with SigProfiler
> ### Aliases: sigprofiler sigprofiler_extract sigprofiler_import
> ### sigprofiler_reorder
>
> ### ** Examples
>
> if (FALSE) {
+ load(system.file("extdata", "toy_copynumber_tally_W.RData",
+ package = "sigminer", mustWork = TRUE
+ ))
+
+ reticulate::conda_list()
+
+ sigprofiler_extract(cn_tally_W$nmf_matrix, "~/test/test_sigminer",
+ use_conda = TRUE
+ )
+
+ sigprofiler_extract(cn_tally_W$nmf_matrix, "~/test/test_sigminer",
+ use_conda = FALSE, py_path = "/Users/wsx/anaconda3/bin/python"
+ )
+ }
>
> data("simulated_catalogs")
> sigprofiler_reorder(t(simulated_catalogs$set1))
Downloading reference file...
Warning in download.file(file, tmpFile, method = method, mode = "wb", quiet = !showProgress) :
URL 'https://raw.githubusercontent.com/AlexandrovLab/SigProfilerMatrixGenerator/master/SigProfilerMatrixGenerator/references/matrix/BRCA_example/BRCA_example.SBS96.all': Timeout of 60 seconds was reached
Error in download.file(file, tmpFile, method = method, mode = "wb", quiet = !showProgress) :
cannot open URL 'https://raw.githubusercontent.com/AlexandrovLab/SigProfilerMatrixGenerator/master/SigProfilerMatrixGenerator/references/matrix/BRCA_example/BRCA_example.SBS96.all'
Calls: sigprofiler_reorder -> <Anonymous> -> download.file
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2.3.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg19’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.3.1
Check: installed package size
Result: NOTE
installed size is 6.0Mb
sub-directories of 1Mb or more:
extdata 1.0Mb
help 1.7Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 2.2.0
Check: installed package size
Result: NOTE
installed size is 8.7Mb
sub-directories of 1Mb or more:
data 1.1Mb
doc 1.3Mb
shinyapp 5.6Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13