Last updated on 2026-01-27 03:48:08 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| iSubGen | 3 | 1 | 9 |
Current CRAN status: ERROR: 3, NOTE: 1, OK: 9
Version: 1.0.1
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Paul C Boutros <pboutros@mednet.ucla.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Natalie",
family = "Fox",
role = "aut"),
person(given = c("Paul", "C"),
family = "Boutros",
role = "cre",
email = "pboutros@mednet.ucla.edu"))
as necessary.
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.4
Check: examples
Result: ERROR
Running examples in ‘iSubGen-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: write.scaling.factors
> ### Title: Write scaling factors to file
> ### Aliases: write.scaling.factors
>
> ### ** Examples
>
>
> # load the aberration profiles for three data types
> example.molecular.data.dir <- paste0(path.package('iSubGen'),'/exdata/');
> molecular.data <- list();
> for (i in c('cna','snv','methy')) {
+ molecular.data[[i]] <- load.molecular.aberration.data(
+ paste0(example.molecular.data.dir,i,'_profiles.txt'),
+ patients = c(paste0('EP00',1:9), paste0('EP0',10:30))
+ );
+ }
>
> # calculate scaling factors for all three data types
> scaling.factors <- calculate.scaling(molecular.data);
>
> # save the scaling factors to file
> write.scaling.factors(scaling.factors, example.molecular.data.dir);
Warning in file(file, ifelse(append, "a", "w")) :
cannot open file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/iSubGen/exdata/cna_gene_recenter.txt': Read-only file system
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: write.scaling.factors -> write.table -> file
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.4
Check: package dependencies
Result: ERROR
Package required but not available: ‘ConsensusClusterPlus’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64