Last updated on 2025-09-07 08:49:27 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.5 | 5.96 | 190.22 | 196.18 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.0.5 | 3.47 | 159.00 | 162.47 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.0.5 | 192.48 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.0.5 | 335.15 | OK | |||
| r-devel-windows-x86_64 | 0.0.5 | 7.00 | 628.00 | 635.00 | OK | |
| r-patched-linux-x86_64 | 0.0.5 | 5.22 | 195.34 | 200.56 | OK | |
| r-release-linux-x86_64 | 0.0.5 | 5.06 | 197.48 | 202.54 | OK | |
| r-release-macos-arm64 | 0.0.5 | 322.00 | OK | |||
| r-release-macos-x86_64 | 0.0.5 | 354.00 | OK | |||
| r-release-windows-x86_64 | 0.0.5 | 7.00 | 639.00 | 646.00 | OK | |
| r-oldrel-macos-arm64 | 0.0.5 | 205.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.0.5 | 359.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.0.5 | 9.00 | 898.00 | 907.00 | OK |
Version: 0.0.5
Check: examples
Result: ERROR
Running examples in ‘mllrnrs-Ex.R’ failed
The error most likely occurred in:
> ### Name: LearnerGlmnet
> ### Title: R6 Class to construct a Glmnet learner
> ### Aliases: LearnerGlmnet
>
> ### ** Examples
>
> # binary classification
>
> library(mlbench)
> data("PimaIndiansDiabetes2")
> dataset <- PimaIndiansDiabetes2 |>
+ data.table::as.data.table() |>
+ na.omit()
>
> seed <- 123
> feature_cols <- colnames(dataset)[1:8]
>
> train_x <- model.matrix(
+ ~ -1 + .,
+ dataset[, .SD, .SDcols = feature_cols]
+ )
> train_y <- as.integer(dataset[, get("diabetes")]) - 1L
>
> fold_list <- splitTools::create_folds(
+ y = train_y,
+ k = 3,
+ type = "stratified",
+ seed = seed
+ )
> glmnet_cv <- mlexperiments::MLCrossValidation$new(
+ learner = mllrnrs::LearnerGlmnet$new(
+ metric_optimization_higher_better = FALSE
+ ),
+ fold_list = fold_list,
+ ncores = 2,
+ seed = 123
+ )
> glmnet_cv$learner_args <- list(
+ alpha = 1,
+ lambda = 0.1,
+ family = "binomial",
+ type.measure = "class",
+ standardize = TRUE
+ )
> glmnet_cv$predict_args <- list(type = "response")
> glmnet_cv$performance_metric_args <- list(positive = "1")
> glmnet_cv$performance_metric <- mlexperiments::metric("auc")
Error: Package "measures" must be installed to use function 'metric()'.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.0.5
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
> # https://github.com/Rdatatable/data.table/issues/5658
> Sys.setenv("OMP_THREAD_LIMIT" = 2)
> Sys.setenv("Ncpu" = 2)
>
> library(testthat)
> library(mllrnrs)
>
> test_check("mllrnrs")
[ FAIL 17 | WARN 0 | SKIP 1 | PASS 0 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-lints.R:10:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-glmnet_binary.R:88:5'): test nested cv, bayesian, binary - glmnet ──
Error: Package "measures" must be installed to use function 'metric()'.
Backtrace:
▆
1. └─mlexperiments::metric("prauc") at test-glmnet_binary.R:88:5
── Error ('test-glmnet_binary.R:134:5'): test nested cv, grid - glmnet, errors ──
Error: Package "measures" must be installed to use function 'metric()'.
Backtrace:
▆
1. └─mlexperiments::metric("prauc") at test-glmnet_binary.R:134:5
── Error ('test-glmnet_multiclass.R:89:5'): test nested cv, bayesian, multiclass - glmnet ──
Error: Package "measures" must be installed to use function 'metric()'.
Backtrace:
▆
1. └─mlexperiments::metric("bacc") at test-glmnet_multiclass.R:89:5
── Error ('test-glmnet_regression.R:87:5'): test nested cv, bayesian, regression - glmnet ──
Error: Package "measures" must be installed to use function 'metric()'.
Backtrace:
▆
1. └─mlexperiments::metric("rmsle") at test-glmnet_regression.R:87:5
── Error ('test-glmnet_regression.R:134:5'): test nested cv, grid - glmnet ─────
Error: Package "measures" must be installed to use function 'metric()'.
Backtrace:
▆
1. └─mlexperiments::metric("rmsle") at test-glmnet_regression.R:134:5
── Error ('test-lightgbm_binary.R:99:5'): test nested cv, bayesian, binary - lightgbm ──
Error: Package "measures" must be installed to use function 'metric()'.
Backtrace:
▆
1. └─mlexperiments::metric("auc") at test-lightgbm_binary.R:99:5
── Error ('test-lightgbm_multiclass.R:101:5'): test nested cv, bayesian, multiclass - lightgbm ──
Error: Package "measures" must be installed to use function 'metric()'.
Backtrace:
▆
1. └─mlexperiments::metric("bacc") at test-lightgbm_multiclass.R:101:5
── Error ('test-lightgbm_regression.R:99:5'): test nested cv, bayesian, regression - lightgbm ──
Error: Package "measures" must be installed to use function 'metric()'.
Backtrace:
▆
1. └─mlexperiments::metric("msle") at test-lightgbm_regression.R:99:5
── Error ('test-lightgbm_regression.R:141:5'): test nested cv, grid - lightgbm ──
Error: Package "measures" must be installed to use function 'metric()'.
Backtrace:
▆
1. └─mlexperiments::metric("msle") at test-lightgbm_regression.R:141:5
── Error ('test-ranger_binary.R:92:5'): test nested cv, bayesian, binary - ranger ──
Error: Package "measures" must be installed to use function 'metric()'.
Backtrace:
▆
1. └─mlexperiments::metric("auc") at test-ranger_binary.R:92:5
── Error ('test-ranger_multiclass.R:93:5'): test nested cv, bayesian, regression - ranger ──
Error: Package "measures" must be installed to use function 'metric()'.
Backtrace:
▆
1. └─mlexperiments::metric("bacc") at test-ranger_multiclass.R:93:5
── Error ('test-ranger_regression.R:87:5'): test nested cv, bayesian, regression - ranger ──
Error: Package "measures" must be installed to use function 'metric()'.
Backtrace:
▆
1. └─mlexperiments::metric("msle") at test-ranger_regression.R:87:5
── Error ('test-ranger_regression.R:125:5'): test nested cv, grid - ranger ─────
Error: Package "measures" must be installed to use function 'metric()'.
Backtrace:
▆
1. └─mlexperiments::metric("msle") at test-ranger_regression.R:125:5
── Error ('test-xgboost_binary.R:83:5'): test nested cv, bayesian, binary:logistic - xgboost ──
Error: Package "measures" must be installed to use function 'metric()'.
Backtrace:
▆
1. └─mlexperiments::metric("auc") at test-xgboost_binary.R:83:5
── Error ('test-xgboost_multiclass.R:86:5'): test nested cv, bayesian, multi:softprob - xgboost, with weights ──
Error: Package "measures" must be installed to use function 'metric()'.
Backtrace:
▆
1. └─mlexperiments::metric("bacc") at test-xgboost_multiclass.R:86:5
── Error ('test-xgboost_regression.R:82:5'): test nested cv, bayesian, reg:squarederror - xgboost ──
Error: Package "measures" must be installed to use function 'metric()'.
Backtrace:
▆
1. └─mlexperiments::metric("msle") at test-xgboost_regression.R:82:5
── Error ('test-xgboost_regression.R:125:5'): test nested cv, grid - xgboost ───
Error: Package "measures" must be installed to use function 'metric()'.
Backtrace:
▆
1. └─mlexperiments::metric("msle") at test-xgboost_regression.R:125:5
[ FAIL 17 | WARN 0 | SKIP 1 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang