Last updated on 2025-12-24 09:50:21 CET.
| Package | ERROR | OK |
|---|---|---|
| injurytools | 4 | 9 |
Current CRAN status: ERROR: 4, OK: 9
Version: 2.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘estimate-epi-measures.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘estimate-epi-measures.Rmd’
--- re-building ‘model-injury-data-i.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘model-injury-data-i.Rmd’
--- re-building ‘model-injury-data-ii.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘model-injury-data-ii.Rmd’
--- re-building ‘prepare-injury-data.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘prepare-injury-data.Rmd’
--- re-building ‘visualize-injury-data.Rmd’ using rmarkdown
Quitting from visualize-injury-data.Rmd:177-196 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `geom_text_contour()`:
! Problem while converting geom to grob.
ℹ Error occurred in the 6th layer.
Caused by error in `[.data.table`:
! attempt access index 18/18 in VECTOR_ELT
---
Backtrace:
▆
1. ├─base::withVisible(knit_print(x, ...))
2. ├─knitr::knit_print(x, ...)
3. └─knitr:::knit_print.default(x, ...)
4. └─knitr::normal_print(x)
5. ├─base::print(x)
6. └─ggplot2 (local) `print.ggplot2::ggplot`(x)
7. ├─ggplot2::ggplot_gtable(data)
8. └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
9. └─ggplot2:::by_layer(...)
10. ├─rlang::try_fetch(...)
11. │ ├─base::tryCatch(...)
12. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
13. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
14. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
15. │ └─base::withCallingHandlers(...)
16. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
17. └─l$draw_geom(d, layout)
18. └─ggplot2 (local) draw_geom(..., self = self)
19. └─self$geom$draw_layer(...)
20. └─ggplot2 (local) draw_layer(..., self = self)
21. └─base::lapply(...)
22. └─ggplot2 (local) FUN(X[[i]], ...)
23. ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
24. └─self$draw_panel(...)
25. └─metR (local) draw_panel(...)
26. ├─data[, `:=`(N, .N), by = .(group, piece)]
27. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'visualize-injury-data.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 6th layer.
Caused by error in `[.data.table`:
! attempt access index 18/18 in VECTOR_ELT
--- failed re-building ‘visualize-injury-data.Rmd’
SUMMARY: processing the following file failed:
‘visualize-injury-data.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘estimate-epi-measures.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘estimate-epi-measures.Rmd’
--- re-building ‘model-injury-data-i.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘model-injury-data-i.Rmd’
--- re-building ‘model-injury-data-ii.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘model-injury-data-ii.Rmd’
--- re-building ‘prepare-injury-data.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘prepare-injury-data.Rmd’
--- re-building ‘visualize-injury-data.Rmd’ using rmarkdown
Quitting from visualize-injury-data.Rmd:177-196 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'visualize-injury-data.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 6th layer.
Caused by error in `[.data.table`:
! attempt access index 18/18 in VECTOR_ELT
--- failed re-building ‘visualize-injury-data.Rmd’
SUMMARY: processing the following file failed:
‘visualize-injury-data.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘estimate-epi-measures.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘estimate-epi-measures.Rmd’
--- re-building ‘model-injury-data-i.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘model-injury-data-i.Rmd’
--- re-building ‘model-injury-data-ii.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘model-injury-data-ii.Rmd’
--- re-building ‘prepare-injury-data.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘prepare-injury-data.Rmd’
--- re-building ‘visualize-injury-data.Rmd’ using rmarkdown
Quitting from visualize-injury-data.Rmd:177-196 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `geom_text_contour()`:
! Problem while converting geom to grob.
ℹ Error occurred in the 6th layer.
Caused by error in `[.data.table`:
! attempt access index 18/18 in VECTOR_ELT
---
Backtrace:
▆
1. ├─base::withVisible(knit_print(x, ...))
2. ├─knitr::knit_print(x, ...)
3. └─knitr:::knit_print.default(x, ...)
4. └─knitr::normal_print(x)
5. ├─base::print(x)
6. └─ggplot2 (local) `print.ggplot2::ggplot`(x)
7. ├─ggplot2::ggplot_gtable(data)
8. └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
9. └─ggplot2:::by_layer(...)
10. ├─rlang::try_fetch(...)
11. │ ├─base::tryCatch(...)
12. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
13. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
14. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
15. │ └─base::withCallingHandlers(...)
16. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
17. └─l$draw_geom(d, layout)
18. └─ggplot2 (local) draw_geom(..., self = self)
19. └─self$geom$draw_layer(...)
20. └─ggplot2 (local) draw_layer(..., self = self)
21. └─base::lapply(...)
22. └─ggplot2 (local) FUN(X[[i]], ...)
23. ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
24. └─self$draw_panel(...)
25. └─metR (local) draw_panel(...)
26. ├─data[, `:=`(N, .N), by = .(group, piece)]
27. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'visualize-injury-data.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 6th layer.
Caused by error in `[.data.table`:
! attempt access index 18/18 in VECTOR_ELT
--- failed re-building ‘visualize-injury-data.Rmd’
SUMMARY: processing the following file failed:
‘visualize-injury-data.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc