CRAN Package Check Results for Maintainer ‘Kevin R. Coombes <krc at silicovore.com>’

Last updated on 2025-12-24 15:52:39 CET.

Package	ERROR	WARN	OK
BimodalIndex			13
ClassComparison			13
ClassDiscovery			13
CloneSeeker			13
CrossValidate			13
GenAlgo			13
integIRTy			13
Mercator			13
Modeler			13
NameNeedle			13
NewmanOmics			13
oompaBase			13
oompaData			13
PCDimension			13
plasma	1		12
Polychrome			13
PreProcess			13
RCytoGPS			13
RPointCloud			13
SIBERG			13
SillyPutty			13
SVAlignR			13
TailRank			13
Thresher			13
Umpire			13
WayFindR	1	1	11

Package BimodalIndex

Current CRAN status: OK: 13

Package ClassComparison

Current CRAN status: OK: 13

Package ClassDiscovery

Current CRAN status: OK: 13

Package CloneSeeker

Current CRAN status: OK: 13

Package CrossValidate

Current CRAN status: OK: 13

Package GenAlgo

Current CRAN status: OK: 13

Package integIRTy

Current CRAN status: OK: 13

Package Mercator

Current CRAN status: OK: 13

Package Modeler

Current CRAN status: OK: 13

Package NameNeedle

Current CRAN status: OK: 13

Package NewmanOmics

Current CRAN status: OK: 13

Package oompaBase

Current CRAN status: OK: 13

Package oompaData

Current CRAN status: OK: 13

Package PCDimension

Current CRAN status: OK: 13

Package plasma

Current CRAN status: ERROR: 1, OK: 12

Version: 1.1.5
Check: examples
Result: ERROR Running examples in ‘plasma-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: Contribution-class > ### Title: Class '"Contribution"' > ### Aliases: Contribution Contribution-class > ### [,Contribution,ANY,ANY,ANY-method summary,Contribution-method > ### image,Contribution-method heat heat,Contribution-method > ### getCompositeWeights getAllWeights getFinalWeights getTop > ### pickSignificant > ### Keywords: classes > > ### ** Examples > > fls <- try(loadESCAdata()) Warning in load(U, env) : URL 'http://silicovore.com/data/TCGA-ESCA.RData': Timeout of 60 seconds was reached Error in load(U, env) : cannot read from connection > if (inherits(fls, "try-error")) { + stop("Unable to load data from remote server.") + } Error: Unable to load data from remote server. Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed 02-fitCoxModel 5.106 0.099 7.979 04-plasma-class 4.807 0.161 7.462 04-plasmaPredictions-class 4.287 0.043 6.867 03-manyCoxModels 4.035 0.088 6.328 Flavor: r-devel-linux-x86_64-debian-clang

Package Polychrome

Current CRAN status: OK: 13

Package PreProcess

Current CRAN status: OK: 13

Package RCytoGPS

Current CRAN status: OK: 13

Package RPointCloud

Current CRAN status: OK: 13

Package SIBERG

Current CRAN status: OK: 13

Package SillyPutty

Current CRAN status: OK: 13

Package SVAlignR

Current CRAN status: OK: 13

Package TailRank

Current CRAN status: OK: 13

Package Thresher

Current CRAN status: OK: 13

Package Umpire

Current CRAN status: OK: 13

Package WayFindR

Current CRAN status: ERROR: 1, WARN: 1, OK: 11

Version: 0.5.0
Check: CRAN incoming feasibility
Result: WARN Maintainer: ‘Kevin R. Coombes <krc@silicovore.com>’ Strong dependencies not in the CRAN or BioC software repositories: org.Hs.eg.db Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.5.0
Check: package dependencies
Result: ERROR Package required but not available: ‘org.Hs.eg.db’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-release-macos-arm64