Last updated on 2026-06-13 17:54:08 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.6 | 8.86 | 281.04 | 289.90 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.0.6 | 6.07 | 197.83 | 203.90 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.0.6 | 12.00 | 443.38 | 455.38 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.0.6 | 13.00 | 481.67 | 494.67 | OK | |
| r-devel-windows-x86_64 | 0.0.6 | 13.00 | 311.00 | 324.00 | OK | |
| r-patched-linux-x86_64 | 0.0.6 | 6.23 | 275.32 | 281.55 | OK | |
| r-release-linux-x86_64 | 0.0.6 | 6.01 | 271.09 | 277.10 | OK | |
| r-release-macos-arm64 | 0.0.6 | 2.00 | 36.00 | 38.00 | OK | |
| r-release-macos-x86_64 | 0.0.6 | 6.00 | 90.00 | 96.00 | OK | |
| r-release-windows-x86_64 | 0.0.6 | 14.00 | 111.00 | 125.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.0.6 | 2.00 | 31.00 | 33.00 | OK | |
| r-oldrel-macos-x86_64 | 0.0.6 | 6.00 | 142.00 | 148.00 | OK | |
| r-oldrel-windows-x86_64 | 0.0.6 | 18.00 | 410.00 | 428.00 | OK |
Version: 0.0.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'ivolcano.qmd' using html
processing file: ivolcano.qmd
Error:
! No esummary records found in file
Backtrace:
▆
1. └─fanyi::gene_summary(top_eg)
2. └─fanyi:::gene_summary_ncbi(entrez)
3. └─fanyi:::.get_entrez_summary(newitem)
4. └─rentrez::entrez_summary(db = "gene", id = entrez)
5. ├─rentrez:::parse_esummary(whole_record, v, always_return_list)
6. └─rentrez:::parse_esummary.list(whole_record, v, always_return_list)
Quitting from ivolcano.qmd:106-126 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! No esummary records found in file
---
Backtrace:
▆
1. └─fanyi::gene_summary(top_eg)
2. └─fanyi:::gene_summary_ncbi(entrez)
3. └─fanyi:::.get_entrez_summary(newitem)
4. └─rentrez::entrez_summary(db = "gene", id = entrez)
5. ├─rentrez:::parse_esummary(whole_record, v, always_return_list)
6. └─rentrez:::parse_esummary.list(whole_record, v, always_return_list)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Execution halted
WARN: Error encountered when rendering files
Error: processing vignette 'ivolcano.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error in `quarto_render()`:
✖ Error returned by quarto CLI.
-----------------------------
processing file: ivolcano.qmd
Error:
! No esummary records found in file
Backtrace:
▆
1. └─fanyi::gene_summary(top_eg)
2. └─fanyi:::gene_summary_ncbi(entrez)
3. └─fanyi:::.get_entrez_summary(newitem)
4. └─rentrez::entrez_summary(db = "gene", id = entrez)
5. ├─rentrez:::parse_esummary(whole_record, v, always_return_list)
6. └─rentrez:::parse_esummary.list(whole_record, v, always_return_list)
Quitting from ivolcano.qmd:106-126 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! No esummary records found in file
---
Backtrace:
▆
1. └─fanyi::gene_summary(top_eg)
2. └─fanyi:::gene_summary_ncbi(entrez)
3. └─fanyi:::.get_entrez_summary(newitem)
4. └─rentrez::entrez_summary(db = "gene", id = entrez)
5. ├─rentrez:::parse_esummary(whole_record, v, always_return_list)
6. └─rentrez:::parse_esummary.list(whole_record, v, always_return_list)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Execution halted
WARN: Error encountered when rendering files
Caused by error in `processx::run()`:
! System command 'quarto.exe' failed
--- failed re-building 'ivolcano.qmd'
SUMMARY: processing the following file failed:
'ivolcano.qmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64