Last updated on 2025-12-24 22:52:15 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 12.36 | 130.39 | 142.75 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 9.77 | 96.57 | 106.34 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 20.00 | 211.23 | 231.23 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 22.00 | 227.59 | 249.59 | OK | |
| r-devel-windows-x86_64 | 0.1.0 | 14.00 | 137.00 | 151.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 10.04 | 121.93 | 131.97 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 10.46 | 120.67 | 131.13 | OK | |
| r-release-macos-arm64 | 0.1.0 | OK | ||||
| r-release-macos-x86_64 | 0.1.0 | 8.00 | 150.00 | 158.00 | OK | |
| r-release-windows-x86_64 | 0.1.0 | 12.00 | 126.00 | 138.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.0 | 8.00 | 125.00 | 133.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.0 | 16.00 | 167.00 | 183.00 | OK |
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [29s/37s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(glioblastomaEHRsData)
>
> test_check("glioblastomaEHRsData")
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Saving _problems/test-descriptiveTableMunich2019dataset-12.R
processing file: file1007fd25949caf.Rmd
output file: file1007fd25949caf.knit.md
/usr/bin/pandoc +RTS -K512m -RTS file1007fd25949caf.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /home/hornik/tmp/scratch/RtmpizBvEK/tables/munich_test_table.html --lua-filter /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --template /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rmarkdown/rmd/h/default.html --syntax-highlighting=none --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /home/hornik/tmp/scratch/RtmpizBvEK/rmarkdown-str1007fd67dff673.html
Output created: /home/hornik/tmp/scratch/RtmpizBvEK/tables/munich_test_table.html
Saving _problems/test-descriptiveTableTainan2020dataset-12.R
processing file: file1007fd74e5cb7e.Rmd
output file: file1007fd74e5cb7e.knit.md
/usr/bin/pandoc +RTS -K512m -RTS file1007fd74e5cb7e.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /home/hornik/tmp/scratch/RtmpizBvEK/tables/tainan_test_table.html --lua-filter /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --template /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rmarkdown/rmd/h/default.html --syntax-highlighting=none --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /home/hornik/tmp/scratch/RtmpizBvEK/rmarkdown-str1007fd514b3078.html
Output created: /home/hornik/tmp/scratch/RtmpizBvEK/tables/tainan_test_table.html
Saving _problems/test-descriptiveTableUtrecht2019dataset-12.R
processing file: file1007fd4d5ef117.Rmd
output file: file1007fd4d5ef117.knit.md
/usr/bin/pandoc +RTS -K512m -RTS file1007fd4d5ef117.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /home/hornik/tmp/scratch/RtmpizBvEK/tables/utrecht_test_table.html --lua-filter /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --template /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rmarkdown/rmd/h/default.html --syntax-highlighting=none --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /home/hornik/tmp/scratch/RtmpizBvEK/rmarkdown-str1007fd5b2938d.html
Output created: /home/hornik/tmp/scratch/RtmpizBvEK/tables/utrecht_test_table.html
Saving 7 x 7 in image
Saving 7 x 7 in image
Saving 7 x 7 in image
Saving 7 x 7 in image
Saving 7 x 7 in image
Saving 7 x 7 in image
[ FAIL 3 | WARN 1 | SKIP 3 | PASS 102 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• pandoc not available (3): 'test-descriptiveTableMunich2019dataset.R:27:3',
'test-descriptiveTableTainan2020dataset.R:27:3',
'test-descriptiveTableUtrecht2019dataset.R:27:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-descriptiveTableMunich2019dataset.R:12:3'): descriptiveTableMunich2019dataset(savePath = 'tables/') return a table1 object and save a png file ──
Error in ``[.data.table`(grid_data, , `:=`("cell_width", safe_stat(.SD$col_width, FUN = sum, NA_value = NA_real_)), by = "rowspan_group")`: attempt access index 14/14 in VECTOR_ELT
Backtrace:
▆
1. └─glioblastomaEHRsData::descriptiveTableMunich2019dataset(savePath = path) at test-descriptiveTableMunich2019dataset.R:12:3
2. └─glioblastomaEHRsData:::saveTable(...)
3. └─flextable::save_as_image(t1flex(t1), savePath)
4. └─flextable::gen_grob(x, fit = "fixed", just = "center")
5. └─flextable:::get_grid_data(x, autowidths, wrapping)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-descriptiveTableTainan2020dataset.R:12:3'): descriptiveTableTainan2020dataset(savePath = 'tables/') return a table1 object and save a png file ──
Error in ``[.data.table`(grid_data, , `:=`("cell_width", safe_stat(.SD$col_width, FUN = sum, NA_value = NA_real_)), by = "rowspan_group")`: attempt access index 14/14 in VECTOR_ELT
Backtrace:
▆
1. └─glioblastomaEHRsData::descriptiveTableTainan2020dataset(savePath = path) at test-descriptiveTableTainan2020dataset.R:12:3
2. └─glioblastomaEHRsData:::saveTable(...)
3. └─flextable::save_as_image(t1flex(t1), savePath)
4. └─flextable::gen_grob(x, fit = "fixed", just = "center")
5. └─flextable:::get_grid_data(x, autowidths, wrapping)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-descriptiveTableUtrecht2019dataset.R:12:3'): descriptiveTableUtrecht2019dataset(savePath = 'tables/') return a table1 object and save a png file ──
Error in ``[.data.table`(grid_data, , `:=`("cell_width", safe_stat(.SD$col_width, FUN = sum, NA_value = NA_real_)), by = "rowspan_group")`: attempt access index 14/14 in VECTOR_ELT
Backtrace:
▆
1. └─glioblastomaEHRsData::descriptiveTableUtrecht2019dataset(savePath = path) at test-descriptiveTableUtrecht2019dataset.R:12:3
2. └─glioblastomaEHRsData:::saveTable(...)
3. └─flextable::save_as_image(t1flex(t1), savePath)
4. └─flextable::gen_grob(x, fit = "fixed", just = "center")
5. └─flextable:::get_grid_data(x, autowidths, wrapping)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
[ FAIL 3 | WARN 1 | SKIP 3 | PASS 102 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [18s/21s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(glioblastomaEHRsData)
>
> test_check("glioblastomaEHRsData")
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Error : Can't find test_paths
Saving _problems/test-descriptiveTableMunich2019dataset-12.R
processing file: file21b99223115ce0.Rmd
output file: file21b99223115ce0.knit.md
/usr/bin/pandoc +RTS -K512m -RTS file21b99223115ce0.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmpotE3ZC/tables/munich_test_table.html --lua-filter /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --template /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmd/h/default.html --syntax-highlighting=none --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /tmp/RtmpotE3ZC/rmarkdown-str21b99210ab0da2.html
Output created: /tmp/RtmpotE3ZC/tables/munich_test_table.html
Saving _problems/test-descriptiveTableTainan2020dataset-12.R
processing file: file21b99247e898f2.Rmd
output file: file21b99247e898f2.knit.md
/usr/bin/pandoc +RTS -K512m -RTS file21b99247e898f2.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmpotE3ZC/tables/tainan_test_table.html --lua-filter /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --template /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmd/h/default.html --syntax-highlighting=none --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /tmp/RtmpotE3ZC/rmarkdown-str21b9922432aab5.html
Output created: /tmp/RtmpotE3ZC/tables/tainan_test_table.html
Saving _problems/test-descriptiveTableUtrecht2019dataset-12.R
processing file: file21b9927e17d052.Rmd
output file: file21b9927e17d052.knit.md
/usr/bin/pandoc +RTS -K512m -RTS file21b9927e17d052.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmpotE3ZC/tables/utrecht_test_table.html --lua-filter /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --template /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmd/h/default.html --syntax-highlighting=none --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /tmp/RtmpotE3ZC/rmarkdown-str21b9923d81e519.html
Output created: /tmp/RtmpotE3ZC/tables/utrecht_test_table.html
Saving 7 x 7 in image
Saving 7 x 7 in image
Saving 7 x 7 in image
Saving 7 x 7 in image
Saving 7 x 7 in image
Saving 7 x 7 in image
[ FAIL 3 | WARN 1 | SKIP 3 | PASS 102 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• pandoc not available (3): 'test-descriptiveTableMunich2019dataset.R:27:3',
'test-descriptiveTableTainan2020dataset.R:27:3',
'test-descriptiveTableUtrecht2019dataset.R:27:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-descriptiveTableMunich2019dataset.R:12:3'): descriptiveTableMunich2019dataset(savePath = 'tables/') return a table1 object and save a png file ──
Error in ``[.data.table`(grid_data, , `:=`("cell_width", safe_stat(.SD$col_width, FUN = sum, NA_value = NA_real_)), by = "rowspan_group")`: attempt access index 14/14 in VECTOR_ELT
Backtrace:
▆
1. └─glioblastomaEHRsData::descriptiveTableMunich2019dataset(savePath = path) at test-descriptiveTableMunich2019dataset.R:12:3
2. └─glioblastomaEHRsData:::saveTable(...)
3. └─flextable::save_as_image(t1flex(t1), savePath)
4. └─flextable::gen_grob(x, fit = "fixed", just = "center")
5. └─flextable:::get_grid_data(x, autowidths, wrapping)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-descriptiveTableTainan2020dataset.R:12:3'): descriptiveTableTainan2020dataset(savePath = 'tables/') return a table1 object and save a png file ──
Error in ``[.data.table`(grid_data, , `:=`("cell_width", safe_stat(.SD$col_width, FUN = sum, NA_value = NA_real_)), by = "rowspan_group")`: attempt access index 14/14 in VECTOR_ELT
Backtrace:
▆
1. └─glioblastomaEHRsData::descriptiveTableTainan2020dataset(savePath = path) at test-descriptiveTableTainan2020dataset.R:12:3
2. └─glioblastomaEHRsData:::saveTable(...)
3. └─flextable::save_as_image(t1flex(t1), savePath)
4. └─flextable::gen_grob(x, fit = "fixed", just = "center")
5. └─flextable:::get_grid_data(x, autowidths, wrapping)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-descriptiveTableUtrecht2019dataset.R:12:3'): descriptiveTableUtrecht2019dataset(savePath = 'tables/') return a table1 object and save a png file ──
Error in ``[.data.table`(grid_data, , `:=`("cell_width", safe_stat(.SD$col_width, FUN = sum, NA_value = NA_real_)), by = "rowspan_group")`: attempt access index 14/14 in VECTOR_ELT
Backtrace:
▆
1. └─glioblastomaEHRsData::descriptiveTableUtrecht2019dataset(savePath = path) at test-descriptiveTableUtrecht2019dataset.R:12:3
2. └─glioblastomaEHRsData:::saveTable(...)
3. └─flextable::save_as_image(t1flex(t1), savePath)
4. └─flextable::gen_grob(x, fit = "fixed", just = "center")
5. └─flextable:::get_grid_data(x, autowidths, wrapping)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
[ FAIL 3 | WARN 1 | SKIP 3 | PASS 102 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc