CRAN Package Check Results for Maintainer ‘Dolors Pelegri-Siso <dolors.pelegri at isglobal.org>’

Last updated on 2026-03-16 14:55:49 CET.

Package	ERROR	NOTE	OK
BigDataStatMeth	3	3	8

Package BigDataStatMeth

Current CRAN status: ERROR: 3, NOTE: 3, OK: 8

Additional issues

M1mac

Version: 1.0.3
Check: whether package can be installed
Result: WARN Found the following significant warnings: ../inst/include/hdf5Utilities/hdf5DiagonalMethods.hpp:206:72: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘hsize_t’ {aka ‘long unsigned int’} [-Wformat=] ../inst/include/hdf5Utilities/hdf5DiagonalMethods.hpp:206:111: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘hsize_t’ {aka ‘long unsigned int’} [-Wformat=] ../inst/include/hdf5Utilities/hdf5DiagonalMethods.hpp:307:79: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘hsize_t’ {aka ‘long unsigned int’} [-Wformat=] ../inst/include/hdf5Utilities/hdf5DiagonalMethods.hpp:307:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘hsize_t’ {aka ‘long unsigned int’} [-Wformat=] See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/BigDataStatMeth.Rcheck/00install.out’ for details. * used C++ compiler: ‘g++-15 (Debian 15.2.0-14) 15.2.0’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.3
Check: examples
Result: ERROR Running examples in ‘BigDataStatMeth-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: bdCreate_hdf5_matrix > ### Title: Create hdf5 data file and write data to it > ### Aliases: bdCreate_hdf5_matrix > > ### ** Examples > > > matA <- matrix(c(1,2,3,4,5,6,7,8,9,10,11,12,13,14,15), nrow = 3, byrow = TRUE) > bdCreate_hdf5_matrix(filename = "test_temp.hdf5", + object = matA, group = "datasets", + dataset = "datasetA", transp = FALSE, + overwriteFile = TRUE, + overwriteDataset = TRUE, + unlimited = FALSE) Error in bdCreate_hdf5_matrix(filename = "test_temp.hdf5", object = matA, : c++ exception bdCreate_hdf5_matrix openFile error: HDF5 file is in use by another process. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.3
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘BigDataStatMeth.Rmd’ using rmarkdown Quitting from BigDataStatMeth.Rmd:133-147 [hdf5Create] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `bdCreate_hdf5_matrix()`: ! c++ exception bdCreate_hdf5_matrix openFile error: HDF5 file is in use by another process. --- Backtrace: ▆ 1. └─BigDataStatMeth::bdCreate_hdf5_matrix(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'BigDataStatMeth.Rmd' failed with diagnostics: c++ exception bdCreate_hdf5_matrix openFile error: HDF5 file is in use by another process. --- failed re-building ‘BigDataStatMeth.Rmd’ SUMMARY: processing the following file failed: ‘BigDataStatMeth.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.3
Check: for non-standard things in the check directory
Result: NOTE Found the following files/directories: ‘test_temp.hdf5’ Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang

Version: 1.0.3
Check: whether package can be installed
Result: WARN Found the following significant warnings: ../inst/include/hdf5Utilities/hdf5DiagonalMethods.hpp:207:30: warning: format specifies type 'unsigned long long' but the argument has type 'hsize_t' (aka 'unsigned long') [-Wformat] ../inst/include/hdf5Utilities/hdf5DiagonalMethods.hpp:207:43: warning: format specifies type 'unsigned long long' but the argument has type 'hsize_t' (aka 'unsigned long') [-Wformat] ../inst/include/hdf5Utilities/hdf5DiagonalMethods.hpp:307:91: warning: format specifies type 'unsigned long long' but the argument has type 'hsize_t' (aka 'unsigned long') [-Wformat] ../inst/include/hdf5Utilities/hdf5DiagonalMethods.hpp:307:98: warning: format specifies type 'unsigned long long' but the argument has type 'hsize_t' (aka 'unsigned long') [-Wformat] See ‘/data/gannet/ripley/R/packages/tests-clang/BigDataStatMeth.Rcheck/00install.out’ for details. * used C++ compiler: ‘clang version 22.1.1 (https://github.com/llvm/llvm-project fef02d48c08db859ef83f84232ed78bd9d1c323a)’ Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.3
Check: examples
Result: ERROR Running examples in ‘BigDataStatMeth-Ex.R’ failed The error most likely occurred in: > ### Name: bdCreate_hdf5_matrix > ### Title: Create hdf5 data file and write data to it > ### Aliases: bdCreate_hdf5_matrix > > ### ** Examples > > > matA <- matrix(c(1,2,3,4,5,6,7,8,9,10,11,12,13,14,15), nrow = 3, byrow = TRUE) > bdCreate_hdf5_matrix(filename = "test_temp.hdf5", + object = matA, group = "datasets", + dataset = "datasetA", transp = FALSE, + overwriteFile = TRUE, + overwriteDataset = TRUE, + unlimited = FALSE) Error in bdCreate_hdf5_matrix(filename = "test_temp.hdf5", object = matA, : c++ exception bdCreate_hdf5_matrix openFile error: HDF5 file is in use by another process. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.3
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘BigDataStatMeth.Rmd’ using rmarkdown Quitting from BigDataStatMeth.Rmd:133-147 [hdf5Create] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `bdCreate_hdf5_matrix()`: ! c++ exception bdCreate_hdf5_matrix openFile error: HDF5 file is in use by another process. --- Backtrace: ▆ 1. └─BigDataStatMeth::bdCreate_hdf5_matrix(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'BigDataStatMeth.Rmd' failed with diagnostics: c++ exception bdCreate_hdf5_matrix openFile error: HDF5 file is in use by another process. --- failed re-building ‘BigDataStatMeth.Rmd’ SUMMARY: processing the following file failed: ‘BigDataStatMeth.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.3
Check: whether package can be installed
Result: ERROR Installation failed. Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.0.3
Check: installed package size
Result: NOTE installed size is 110.8Mb sub-directories of 1Mb or more: doc 1.2Mb include 1.4Mb libs 107.7Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.3
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64