Last updated on 2025-07-21 08:49:59 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.0 | 2.29 | 31.77 | 34.06 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.3.0 | 1.82 | 24.35 | 26.17 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.3.0 | 49.56 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.0 | 45.51 | ERROR | |||
| r-devel-windows-x86_64 | 0.3.0 | 4.00 | 51.00 | 55.00 | OK | |
| r-patched-linux-x86_64 | 0.3.0 | 2.04 | 28.22 | 30.26 | OK | |
| r-release-linux-x86_64 | 0.3.0 | 2.13 | 27.77 | 29.90 | OK | |
| r-release-macos-arm64 | 0.3.0 | 29.00 | OK | |||
| r-release-macos-x86_64 | 0.3.0 | 37.00 | OK | |||
| r-release-windows-x86_64 | 0.3.0 | 4.00 | 50.00 | 54.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.0 | 25.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.3.0 | 34.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.3.0 | 5.00 | 57.00 | 62.00 | OK |
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘test-all.R’
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library("testthat")
> test_check("citecorp")
Loading required package: citecorp
[ FAIL 14 | WARN 0 | SKIP 0 | PASS 14 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-oc_coci.R:12:5'): oc_coci_refs works ───────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 40 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:11:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_refs(doi1) at test-oc_coci.R:12:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:33:5'): oc_coci_refs - many dois ─────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 31 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:32:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_refs(c(doi1, doi3)) at test-oc_coci.R:33:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:47:5'): oc_coci_cites works ──────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 28 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:46:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_cites(doi1) at test-oc_coci.R:47:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:67:5'): oc_coci_cites - many dois ────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 35 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:66:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_cites(c(doi1, doi3)) at test-oc_coci.R:67:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:81:5'): oc_coci_meta works ───────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 32 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:80:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_meta(doi1) at test-oc_coci.R:81:5
4. │ └─citecorp:::oc_coci_stub(...)
5. │ └─citecorp:::oc_GET(...)
6. │ └─cli$get(path, query = args)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:100:5'): oc_coci_meta - many dois ────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 34 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:99:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_meta(c(doi1, doi3)) at test-oc_coci.R:100:5
4. │ └─citecorp:::oc_coci_stub(...)
5. │ └─citecorp:::oc_GET(...)
6. │ └─cli$get(path, query = args)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:114:5'): oc_coci_citation works ──────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 29 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:113:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_citation(oci1) at test-oc_coci.R:114:5
4. │ ├─citecorp:::lst2df_tbl(lapply(oci, oc_coci_citation_one, ...))
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(oci, oc_coci_citation_one, ...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_GET(...)
12. │ └─cli$get(path, query = args)
13. │ └─private$make_request(rr)
14. │ └─crul:::crul_fetch(opts)
15. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
16. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:138:5'): oc_coci_citation - many dois ────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 31 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:137:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_citation(c(oci1, oci2)) at test-oc_coci.R:138:5
4. │ ├─citecorp:::lst2df_tbl(lapply(oci, oc_coci_citation_one, ...))
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(oci, oc_coci_citation_one, ...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_GET(...)
12. │ └─cli$get(path, query = args)
13. │ └─private$make_request(rr)
14. │ └─crul:::crul_fetch(opts)
15. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
16. └─curl:::raise_libcurl_error(...)
── Failure ('test-oc_coci.R:155:3'): citecorp catches cloudflare errors ────────
`oc_coci_cites(doi1)` threw an error with unexpected class.
Expected class: http_520
Actual class: curl_error_couldnt_connect/curl_error/error/condition
Message: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 32 ms: Could not connect to server
Backtrace:
▆
1. ├─testthat::expect_error(oc_coci_cites(doi1), class = "http_520") at test-oc_coci.R:155:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. ├─citecorp::oc_coci_cites(doi1)
7. │ ├─citecorp:::lst2df_tbl(...)
8. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
9. │ │ └─citecorp:::lst2df(x)
10. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
11. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
12. │ └─base::lapply(...)
13. │ └─citecorp (local) FUN(X[[i]], ...)
14. │ └─citecorp:::oc_coci_stub(...)
15. │ └─citecorp:::oc_GET(...)
16. │ └─cli$get(path, query = args)
17. │ └─private$make_request(rr)
18. │ └─crul:::crul_fetch(opts)
19. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
20. └─curl:::raise_libcurl_error(...)
── Failure ('test-oc_coci.R:160:3'): citecorp catches cloudflare errors ────────
`oc_coci_cites(doi3)` threw an error with unexpected class.
Expected class: http_524
Actual class: curl_error_couldnt_connect/curl_error/error/condition
Message: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 29 ms: Could not connect to server
Backtrace:
▆
1. ├─testthat::expect_error(oc_coci_cites(doi3), class = "http_524") at test-oc_coci.R:160:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. ├─citecorp::oc_coci_cites(doi3)
7. │ ├─citecorp:::lst2df_tbl(...)
8. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
9. │ │ └─citecorp:::lst2df(x)
10. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
11. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
12. │ └─base::lapply(...)
13. │ └─citecorp (local) FUN(X[[i]], ...)
14. │ └─citecorp:::oc_coci_stub(...)
15. │ └─citecorp:::oc_GET(...)
16. │ └─cli$get(path, query = args)
17. │ └─private$make_request(rr)
18. │ └─crul:::crul_fetch(opts)
19. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
20. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:6:5'): oc_doi2ids works ────────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 31 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:5:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_doi2ids("10.1097/igc.0000000000000609") at test-oc_lookup.R:6:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:16:5'): oc_doi2ids works ───────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 31 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:15:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_doi2ids("10.1093/biomet/80.3.527") at test-oc_lookup.R:16:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:39:5'): oc_pmid2ids works ──────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 31 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:38:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_pmid2ids("26645990") at test-oc_lookup.R:39:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:57:5'): oc_pmcid2ids works ─────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 35 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:56:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_pmcid2ids("PMC4679344") at test-oc_lookup.R:57:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
[ FAIL 14 | WARN 0 | SKIP 0 | PASS 14 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc