Last updated on 2026-03-16 08:52:36 CET.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| dartR | 5 | 9 | ||
| dartR.base | 3 | 11 | ||
| dartR.captive | 5 | 9 | ||
| dartR.data | 3 | 11 | ||
| dartR.popgen | 4 | 10 | ||
| dartR.spatial | 1 | 3 | 10 | |
| dartRverse | 14 | |||
| PopGenReport | 14 |
Current CRAN status: NOTE: 5, OK: 9
Version: 2.9.9.5
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘foreach’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.9.9.5
Check: installed package size
Result: NOTE
installed size is 6.4Mb
sub-directories of 1Mb or more:
R 2.0Mb
help 2.6Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 3, OK: 11
Version: 1.2.2
Check: package dependencies
Result: ERROR
Packages required but not available: 'SNPRelate', 'snpStats'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64
Version: 1.2.2
Check: examples
Result: ERROR
Running examples in ‘dartR.base-Ex.R’ failed
The error most likely occurred in:
> ### Name: gl.filter.ld
> ### Title: Filters loci based on linkage disequilibrium (LD)
> ### Aliases: gl.filter.ld
>
> ### ** Examples
>
> if ((requireNamespace("snpStats", quietly = TRUE)) & (requireNamespace("fields", quietly = TRUE))) {
+ test <- gl.filter.callrate(platypus.gl, threshold = 1)
+ test <- gl.filter.monomorphs(test)
+ report <- gl.report.ld.map(test)
+ res <- gl.filter.ld(x=test,ld.report = report)
+ }
Starting gl.filter.callrate
Processing genlight object with SNP data
Warning: data include loci that are scored NA across all individuals.
Consider filtering using gl <- gl.filter.allna(gl)
Warning: Data may include monomorphic loci in call rate
calculations for filtering
Recalculating Call Rate
Removing loci based on Call Rate, threshold = 1
Completed: gl.filter.callrate
Starting gl.filter.monomorphs
Processing genlight object with SNP data
Identifying monomorphic loci
Removing monomorphic loci and loci with all missing
data
Completed: gl.filter.monomorphs
Starting gl.report.ld.map
Processing genlight object with SNP data
There is no information in the chromosome/position slot of the genlight object.
Assigning the same chromosome ('1') to all the SNPs in the dataset.
Assigning a sequence from 1 to n loci as the position of each SNP.
Calculating LD for all possible SNP pair combinations Calculating pairwise LD in population SEVERN_ABOVE
*** caught segfault ***
address 0x1, cause 'memory not mapped'
Traceback:
1: snpStats::ld(genotype_loci, genotype_loci, stats = ld.stat)
2: gl.report.ld.map(test)
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-release-macos-x86_64
Current CRAN status: WARN: 5, OK: 9
Version: 1.0.2
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Warning: replacing previous import ‘adegenet::glMean’ by ‘dartR.base::glMean’ when loading ‘dartR.captive’
Warning: replacing previous import ‘adegenet::glSum’ by ‘dartR.base::glSum’ when loading ‘dartR.captive’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-linux-x86_64
Current CRAN status: NOTE: 3, OK: 11
Version: 1.0.8
Check: installed package size
Result: NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
data 4.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: WARN: 4, OK: 10
Version: 1.0.0
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Warning: replacing previous import ‘adegenet::glMean’ by ‘dartR.base::glMean’ when loading ‘dartR.popgen’
Warning: replacing previous import ‘adegenet::glSum’ by ‘dartR.base::glSum’ when loading ‘dartR.popgen’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-release-linux-x86_64
Current CRAN status: ERROR: 1, WARN: 3, OK: 10
Version: 1.0.3
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Warning: replacing previous import ‘adegenet::glMean’ by ‘dartR.base::glMean’ when loading ‘dartR.spatial’
Warning: replacing previous import ‘adegenet::glSum’ by ‘dartR.base::glSum’ when loading ‘dartR.spatial’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 1.2.2
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-oldrel-macos-arm64
Current CRAN status: OK: 14
Current CRAN status: OK: 14