Last updated on 2026-07-31 06:57:47 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 44.48 | 408.82 | 453.30 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 34.17 | 278.31 | 312.48 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 76.00 | 627.08 | 703.08 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 33.00 | 278.80 | 311.80 | OK | |
| r-devel-windows-x86_64 | 1.0.1 | 46.00 | 335.00 | 381.00 | OK | |
| r-patched-linux-x86_64 | 1.0.1 | 41.42 | 385.95 | 427.37 | OK | |
| r-release-linux-x86_64 | 1.0.1 | 43.02 | 388.38 | 431.40 | OK | |
| r-release-macos-arm64 | 1.0.1 | 10.00 | 80.00 | 90.00 | ERROR | |
| r-release-macos-x86_64 | 1.0.1 | 29.00 | 258.00 | 287.00 | ERROR | |
| r-release-windows-x86_64 | 1.0.1 | 48.00 | 352.00 | 400.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.1 | 9.00 | 73.00 | 82.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.0.1 | 28.00 | 242.00 | 270.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.0.1 | 66.00 | 488.00 | 554.00 | OK |
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘boldconnectr_workflow.Rmd’ using rmarkdown
Quitting from boldconnectr_workflow.Rmd:121-132 [align-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'muscle'
---
Backtrace:
▆
1. ├─BOLDconnectR::bold.analyze.align(...)
2. │ └─BOLDconnectR:::gen.msa.res(...)
3. └─base::loadNamespace(x)
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'boldconnectr_workflow.Rmd' failed with diagnostics:
there is no package called 'muscle'
--- failed re-building ‘boldconnectr_workflow.Rmd’
SUMMARY: processing the following file failed:
‘boldconnectr_workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘boldconnectr_workflow.Rmd’ using rmarkdown
2026-07-31 15:42:36.310 R[2820:498812] XType: Using static font registry.
Quitting from boldconnectr_workflow.Rmd:121-132 [align-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'muscle'
---
Backtrace:
▆
1. ├─BOLDconnectR::bold.analyze.align(...)
2. │ └─BOLDconnectR:::gen.msa.res(...)
3. └─base::loadNamespace(x)
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'boldconnectr_workflow.Rmd' failed with diagnostics:
there is no package called 'muscle'
--- failed re-building ‘boldconnectr_workflow.Rmd’
SUMMARY: processing the following file failed:
‘boldconnectr_workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64