Last updated on 2026-01-27 09:50:00 CET.
| Package | ERROR | OK |
|---|---|---|
| glyparse | 3 | 10 |
| glyrepr | 13 |
Current CRAN status: ERROR: 3, OK: 10
Version: 0.5.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [11s/13s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(glyparse)
>
> test_check("glyparse")
Saving _problems/test-auto-parse-49.R
[ FAIL 1 | WARN 0 | SKIP 12 | PASS 291 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (12): 'test-parse-iupac-condensed.R:1:1',
'test-parse-iupac-extended.R:74:1', 'test-parse-iupac-short.R:74:1',
'test-parse-pglyco.R:1:1', 'test-parse-pglyco.R:8:1',
'test-parse-pglyco.R:15:1', 'test-parse-pglyco.R:22:1',
'test-parse-strucgp.R:1:1', 'test-parse-strucgp.R:8:1',
'test-parse-wurcs.R:456:1', 'test-parse-wurcs.R:463:1',
'test-parse-wurcs.R:470:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-auto-parse.R:49:3'): auto_parse works with mixed format vector ──
Error in `validate_glycan_structure_vector(reordered_graphs)`: All structures must have the same monosaccharide type.
x Found 2 concrete and 1 generic structure(s) in the same vector.
i Use `convert_to_generic()` to convert concrete structures to generic type.
Backtrace:
▆
1. └─glyparse::auto_parse(mixed_input) at test-auto-parse.R:49:3
2. └─glyparse:::struc_parser_wrapper(x, do_auto_parse)
3. └─glyrepr::as_glycan_structure(unique_graphs)
4. └─vctrs::vec_cast(x, glycan_structure())
5. └─vctrs (local) `<fn>`()
6. └─glyrepr:::vec_cast.glyrepr_structure.list(...)
7. ├─base::do.call(glycan_structure, x)
8. └─glyrepr (local) `<fn>`(`<igraph>`, `<igraph>`, `<igraph>`)
9. └─glyrepr:::validate_glycan_structure_vector(reordered_graphs)
10. └─cli::cli_abort(...)
11. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 12 | PASS 291 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.5.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [30s/115s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(glyparse)
>
> test_check("glyparse")
Saving _problems/test-auto-parse-49.R
[ FAIL 1 | WARN 0 | SKIP 12 | PASS 291 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (12): 'test-parse-iupac-condensed.R:1:1',
'test-parse-iupac-extended.R:74:1', 'test-parse-iupac-short.R:74:1',
'test-parse-pglyco.R:1:1', 'test-parse-pglyco.R:8:1',
'test-parse-pglyco.R:15:1', 'test-parse-pglyco.R:22:1',
'test-parse-strucgp.R:1:1', 'test-parse-strucgp.R:8:1',
'test-parse-wurcs.R:456:1', 'test-parse-wurcs.R:463:1',
'test-parse-wurcs.R:470:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-auto-parse.R:49:3'): auto_parse works with mixed format vector ──
Error in `validate_glycan_structure_vector(reordered_graphs)`: All structures must have the same monosaccharide type.
x Found 2 concrete and 1 generic structure(s) in the same vector.
i Use `convert_to_generic()` to convert concrete structures to generic type.
Backtrace:
▆
1. └─glyparse::auto_parse(mixed_input) at test-auto-parse.R:49:3
2. └─glyparse:::struc_parser_wrapper(x, do_auto_parse)
3. └─glyrepr::as_glycan_structure(unique_graphs)
4. └─vctrs::vec_cast(x, glycan_structure())
5. └─vctrs (local) `<fn>`()
6. └─glyrepr:::vec_cast.glyrepr_structure.list(...)
7. ├─base::do.call(glycan_structure, x)
8. └─glyrepr (local) `<fn>`(`<igraph>`, `<igraph>`, `<igraph>`)
9. └─glyrepr:::validate_glycan_structure_vector(reordered_graphs)
10. └─cli::cli_abort(...)
11. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 12 | PASS 291 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.5.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [26s/32s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(glyparse)
>
> test_check("glyparse")
Saving _problems/test-auto-parse-49.R
[ FAIL 1 | WARN 0 | SKIP 12 | PASS 291 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (12): 'test-parse-iupac-condensed.R:1:1',
'test-parse-iupac-extended.R:74:1', 'test-parse-iupac-short.R:74:1',
'test-parse-pglyco.R:1:1', 'test-parse-pglyco.R:8:1',
'test-parse-pglyco.R:15:1', 'test-parse-pglyco.R:22:1',
'test-parse-strucgp.R:1:1', 'test-parse-strucgp.R:8:1',
'test-parse-wurcs.R:456:1', 'test-parse-wurcs.R:463:1',
'test-parse-wurcs.R:470:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-auto-parse.R:49:3'): auto_parse works with mixed format vector ──
Error in `validate_glycan_structure_vector(reordered_graphs)`: All structures must have the same monosaccharide type.
x Found 2 concrete and 1 generic structure(s) in the same vector.
i Use `convert_to_generic()` to convert concrete structures to generic type.
Backtrace:
▆
1. └─glyparse::auto_parse(mixed_input) at test-auto-parse.R:49:3
2. └─glyparse:::struc_parser_wrapper(x, do_auto_parse)
3. └─glyrepr::as_glycan_structure(unique_graphs)
4. └─vctrs::vec_cast(x, glycan_structure())
5. └─vctrs (local) `<fn>`()
6. └─glyrepr:::vec_cast.glyrepr_structure.list(...)
7. ├─base::do.call(glycan_structure, x)
8. └─glyrepr (local) `<fn>`(`<igraph>`, `<igraph>`, `<igraph>`)
9. └─glyrepr:::validate_glycan_structure_vector(reordered_graphs)
10. └─cli::cli_abort(...)
11. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 12 | PASS 291 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Current CRAN status: OK: 13