e8cf037df57783a7988cc79c49651999 *DESCRIPTION
21679ef93dab6c012b49e1c5da988b13 *LICENSE
a6f0e4c72caed49e326678722c7c4b11 *NAMESPACE
8dde6a9a2d060f6bdb0e484ef9fb48f7 *R/CGNM-package.R
c7a98e3b57f44ec33a656badbabab265 *R/CGNM_result-class.R
3c63892f82be6f1d9c56ebf59f32ead6 *R/Cluster_Gauss_Newton_method.R
c7ad6b9279b3b273c10987d0af175abb *R/PostProcess.R
870ecfd3f1bb9677f7127c96764ad580 *R/generateCGNM_script.R
32b10d6decc292df24d382f164be925d *R/shinyCGNM_related.R
dbb6ef38dda92ee197c5bb75f8fc57ad *README.md
76161b65639451c966be75488458b3c3 *build/partial.rdb
87ce0fe02d0d48ad8bebac8306e8cfbb *build/vignette.rds
fc8a1316c7867bc0f1b7ae983ab7f3c3 *inst/doc/CGNM-vignette.R
7e1eeaad1570f0fe3f4fd4008ded909d *inst/doc/CGNM-vignette.Rmd
2b8b9c5e84dd7ebdca6228efbe6d4091 *inst/doc/CGNM-vignette.html
9303360a92a9ddd894fee996895ac43b *inst/shinyCGNM/CodeGenerationRelatedFunctions.R
9966bb430af2105026f8dade73523836 *inst/shinyCGNM/pitavastatin_rifampicin_CGNM_shiny_example.rds
ee4f31d5c7530e3120a53425c9018d97 *inst/shinyCGNM/rsconnect/shinyapps.io/bluetreeme/shinyCGNM.dcf
28d0fcd4f6c626664ec8e0a7cfb23ea9 *inst/shinyCGNM/server.R
ce120aca6b0cb11c7d66cd638cddbe58 *inst/shinyCGNM/ui.R
5307f1d7907d6b98869db55b6340e13e *man/CGNM-package.Rd
e6b98fc6ff805adfc2ea379be3b6b9d3 *man/CGNM_result-class.Rd
2be7aeeff7f5acc1cbd96a19eebc7aea *man/Cluster_Gauss_Newton_Bootstrap_method.Rd
76b974818fc21c3c3e1bb673599b4c7d *man/Cluster_Gauss_Newton_EBE_method.Rd
9fbe8306456a8ee5dfee3c48f22845f7 *man/Cluster_Gauss_Newton_method.Rd
749759eec7287bc6ca65656550c81466 *man/acceptedApproximateMinimizers.Rd
4079655050c04c4c382072c2beeaff8d *man/acceptedIndices.Rd
0a8a5cf427f91f61e8f1da93352b9c22 *man/acceptedIndices_binary.Rd
f5fcbe64096e96ff2072604cea9a29cf *man/acceptedMaxSSR.Rd
1907574873966199e77356113f7564a0 *man/as_CGNM_result_S4.Rd
6a8ebff3cf6b6aa76bfda5b8ea23bb2a *man/bestApproximateMinimizers.Rd
2f75af9678829ca18d00b866117020c6 *man/col_quantile.Rd
adce23d6c07f79d9e0fe97a773905a8a *man/compare_profileLikelihood.Rd
10223d09c0c54e17acb6f3fba9288452 *man/generateCGNM_script.Rd
6ab55d46c9e8b5f89e190dab19040325 *man/make_ShinyCGNM_doseData.Rd
9a81c86481388ebbbd438b69b05af7ff *man/make_ShinyCGNM_initialCondition.Rd
7dde39a9fdc6878650e60618420f6f8a *man/make_ShinyCGNM_observationData.Rd
aecc4fe9cadb1dd9fbb7ee9f68783ad3 *man/make_ShinyCGNM_parameterInfo.Rd
b1a1c64271bf6544b5d34cabadaeba94 *man/make_ShinyCGNM_simulationTimepoints.Rd
b27d2fa8b91bf95bbec1689732c73925 *man/plot_2DprofileLikelihood.Rd
1bcf0d52f2394ab0c8de662203669509 *man/plot_Rank_SSR.Rd
a1d157a3e7d02db2ba5d849284931cc0 *man/plot_SSR_parameterValue.Rd
26f453702efaf2f40abd8b8d66020d8c *man/plot_SSRsurface.Rd
5ab189b0777ea85b299f1e169396acd9 *man/plot_goodnessOfFit.Rd
5037b99bf5affde43f601c783ca47179 *man/plot_paraDistribution_byHistogram.Rd
080d805da501965c0bb12eee82466215 *man/plot_paraDistribution_byViolinPlots.Rd
4c81aaa3041de9a48a7bb54e252c6fcd *man/plot_parameterValue_scatterPlots.Rd
10c3331cf4a03d95f99dfbe3be9cc989 *man/plot_profileLikelihood.Rd
46539044a3d58209c3a985ae5d942a6e *man/plot_simulationMatrixWithCI.Rd
95876c431eea4a5c2963c307efafc6fa *man/plot_simulationWithCI.Rd
4586cc0711f6f3030c42aa968095a252 *man/shinyCGNM.Rd
7a1b40a73643c43665f2b95ec4ff2d9b *man/suggestInitialLowerRange.Rd
74c31f73fa3008c8c07f7bf8cee5224a *man/suggestInitialUpperRange.Rd
a2eff1aeb385e76583b06a30a9a05960 *man/table_parameterSummary.Rd
24d091db725b651e2f6b7cb32a174d34 *man/table_profileLikelihoodConfidenceInterval.Rd
837e9674507f40300596bdd4140b362f *man/topIndices.Rd
99bd663633bf3c6ccf19d4848e4aa8dd *tests/testthat.R
26e550378f3c4ce353d1538073b41d55 *tests/testthat/helper-flipflop.R
8b78f8a7c44bcf8103c3c4d03f777cc7 *tests/testthat/helper-tempdir.R
df70bed48c1b463a9421d73cfa8c12b0 *tests/testthat/test-bootstrap.R
8f414cf91783a5db5f67aad473337c32 *tests/testthat/test-cluster-gauss-newton-method.R
29e4b6d55d9422c948f85713cfe7fe60 *tests/testthat/test-namespace.R
c46645f7087132ba7ab81b42684fdcda *tests/testthat/test-postprocess.R
1ef587a567965adcd6b29455b73c4759 *tests/testthat/test-s4-in-memory-history.R
e9ef6e47047d47fdb0758174ecfad0a4 *tests/testthat/test-s4-logLocation-functions.R
19f92bd0a3f21037b0fb75e9cc381712 *tests/testthat/test-s4-result.R
7e1eeaad1570f0fe3f4fd4008ded909d *vignettes/CGNM-vignette.Rmd
