9ef56382684f15cbf0f40d688a590032 *DESCRIPTION
04d1eab0c999f677e9942d71d14035b2 *NAMESPACE
df7376743d71e0f1944cd9968e070070 *R/RcppExports.R
43623221ee5624f090a6d794f3ad79e6 *R/calc_act.R
1f05af900068c8bd5405067b86b3c43a *R/calc_ess.R
f053653b4fd1b9465efd8004cc2de037 *R/calc_esses.R
571220ef2e61f7722cc1dc20accfc4c9 *R/calc_geom_mean.R
f225316dbae8e350e82fd1200533c878 *R/calc_hpd_interval.R
ca8f6b3841188bef6ddadcbdf11b5942 *R/calc_mode.R
132f7758881def78fd077c5c212c8336 *R/calc_stderr_mean.R
9b79e54f5964d19497387d1710068bf6 *R/calc_summary_stats.R
767207fae37d1906308fd7a1fd4ff513 *R/count_trees_in_file.R
78925331bf9fa3741577ed79c8a57877 *R/cs_std_dev.R
dd5e09ac5a58b2e17bd6eebc66c977f1 *R/default_params_doc.R
05eaaa6c8c48e83bdeaf836936ba994a *R/extract_operators_lines.R
87e42503ad23f20d008e02002c7850b3 *R/get_path.R
ac4db029930394548fea794d125d483f *R/get_paths.R
6afdc768e5a45e8c138a453d83439583 *R/is_posterior.R
7e906156d6719bc14fd7b24c1226fdd2 *R/is_trees_file.R
1fe1d33c1a8abb926fb872438ed42abd *R/is_trees_posterior.R
8230de01da500ac26596cb01986cc6ac *R/parse_beast_log.R
49c006ed037803fb70ef1cb3804d7c02 *R/parse_beast_output_files.R
27086e9ca3ed8f9141109d2d97dd7933 *R/parse_beast_posterior.R
5313c1d0f5f15e18f604646ac2113c7f *R/parse_beast_state.R
c7e67513e63ea050d0c1d7ca3b9b139b *R/parse_beast_trees.R
8d240427757ee841aed2f486b2535caa *R/remove_burn_in.R
c1850db5fa8458c870c335b264e523b7 *R/remove_burn_ins.R
ead3b01dcdb4319e353163891bede73a *R/save_beast_estimates.R
c31d993d9345e0d485f76b1d97c8aa53 *R/save_beast_trees.R
5883010592b6c54dc94e2d2334ba312b *R/tracerer.R
2cd1fe064a88f6d4fbdbdd1150053f8d *build/vignette.rds
604d69ff7d5954219736e01c41d18e48 *inst/CITATION
8476cc5acd29c2840a57205aac991d4e *inst/WORDLIST
2f7d35bb7a2e37fb2b185e0aaf2a3172 *inst/doc/demo.R
308009c870592bb5dc2475bd447f1ec0 *inst/doc/demo.Rmd
ed28df68c7c34462b7f413f7f25ae8ba *inst/doc/demo.html
3b024a9ad9e6e28be76783920a2c2688 *inst/extdata/anthus_2_4.log
ed473df6c85bcede8fa60a1f8230b30c *inst/extdata/anthus_2_4.state
107b03e0c328c1d2735b8f35d0fe0b01 *inst/extdata/anthus_2_4.xml
ec9d4622f382e3e582f02e19f6c0186f *inst/extdata/anthus_2_4_a.trees
045f10431fb1a789198c59fb5e4efbdc *inst/extdata/anthus_2_4_b.trees
0eedfd95a1fff834d513246b4e4624e2 *inst/extdata/anthus_aco.fas
93d45a2f0c0145ebfebdedeb073025f1 *inst/extdata/anthus_nd2.fas
b8231c2de96de5d0c4ab0082a38c41d5 *inst/extdata/beast2_example_output.log
f83191933040361f729577af64c44110 *inst/extdata/beast2_example_output.trees
346226afa164793704af01106aa3b2d8 *inst/extdata/beast2_example_output.xml
5ac7281e62e96d3c330bb6072aa6096d *inst/extdata/beast2_example_output.xml.state
7905c7b1fc3c7f12f2c9502608fa7c92 *inst/extdata/mcbette_issue_8.trees
e998f1ca74b38af5aff9d901fd8251e7 *inst/extdata/missing_end.trees
9344047dcd5ba98ddbb9b12504eef235 *inst/extdata/unplottable_anthus_aco.trees
65fa86664913e84c5458442c77399167 *man/calc_act.Rd
22f7488c5ff974a00d7e840c1e136469 *man/calc_act_cpp.Rd
89907c1412602bcbd5e823ab0384169a *man/calc_act_r.Rd
97f9257dc293321ca8d061eb881e3433 *man/calc_ess.Rd
3f7ec1100af2948bb3e9ec6f6e7ddd7b *man/calc_esses.Rd
5082483d86bae78aea81057d80fd42ab *man/calc_hpd_interval.Rd
632ac9ff4f736492d17b4109dfe830fa *man/calc_std_error_of_mean_cpp.Rd
dc41d392bb2fd32f4ae2b2417c285e4d *man/calc_stderr_mean.Rd
e7650a19f7de90d034161a1820830bc4 *man/calc_summary_stats.Rd
1754825a22049bb8d67d79458775cf45 *man/calc_summary_stats_trace.Rd
0421f6217d5308e443e21c70eb9e34e4 *man/calc_summary_stats_traces.Rd
bb43d2b4ff3ab4b039eb78194fb716fd *man/count_trees_in_file.Rd
9f3d14c91727fa7429970e013c3dbbe3 *man/cs_std_dev.Rd
a4f9cda31d78d2d69f245c47e9b63f47 *man/default_params_doc.Rd
db790d0c16ddc189fcad308179227d78 *man/extract_operators_lines.Rd
f7de71e5ff24145a37bf281e4d155cfa *man/figures/AppVeyor.png
3f25ab37a1f6270f76c025cf6eda5421 *man/figures/Codecov.png
4f9bce317a2b82518737a7ee7381c2ec *man/figures/TravisCI.png
c07f98fce64224bc36d52026e8ef40f8 *man/figures/tracerer_logo.png
7b081af168b34e37617205ab24d0f447 *man/get_tracerer_path.Rd
ed14c54a7244628c5e3a262202d33fc8 *man/get_tracerer_paths.Rd
541990cb9d3c85d99300c9748205a60f *man/is_posterior.Rd
e343bc1798ec6a9b26cfb3d0bf9ea1d5 *man/is_trees_file.Rd
f06528a692ca210afd6800680afc64d5 *man/is_trees_posterior.Rd
cb623e9394c436949f0d4d5ffe3a9e48 *man/parse_beast_log.Rd
09351e16515951255be944442092886b *man/parse_beast_output_files.Rd
162c95f9c3647159f91e3fffc517bb6f *man/parse_beast_posterior.Rd
d4aa3d213055e201e40457d3136181a7 *man/parse_beast_state_operators.Rd
de2d9709507967cf90494fc378ddab6d *man/parse_beast_trees.Rd
ccde45b4b8a17a2120eb03a557521bcd *man/remove_burn_in.Rd
1d352449429a0ab818d4000f3bd09eaf *man/remove_burn_ins.Rd
97fe6f6c1e4092201769cb29c6557567 *man/save_beast_estimates.Rd
904dc96f5cd112457f69ff7347deb56c *man/save_beast_trees.Rd
136ee55e5327234fb2888191f9c60977 *man/tracerer.Rd
941c560e55c2835d6d79700f6328af62 *src/RcppExports.cpp
0f4e9e12f4996648bd0af0156d4d1a83 *src/calc_act_cpp.cpp
35d34fbde8e5a56972c72df707484233 *src/calc_act_cpp.h
ad741e0ae5c31e93b0994f2abe45116d *src/calc_std_error_of_mean_cpp.cpp
5bf25b7bf60f13aa1772467ce8ade52f *src/calc_std_error_of_mean_cpp.h
308009c870592bb5dc2475bd447f1ec0 *vignettes/demo.Rmd
8f440d5ac99cd59bf0358d79149231a5 *vignettes/densitree_example_output.png
413ee70600b6e3bd87cc7c0b2bddc005 *vignettes/tracer_distr_posterior.png
bdcdd370c9ea76c571ad8138e1937687 *vignettes/tracer_example_output.png
8d16e3a317b24da4b09c4c7cb40482fa *vignettes/tracer_trace_posterior.png
c07f98fce64224bc36d52026e8ef40f8 *vignettes/tracerer_logo.png
