47c388fae5361015af65f0d6fc954fc2 *DESCRIPTION
a8fe601062e8b6dc345024addb4542b7 *NAMESPACE
65becd0b17e7757a70d1ecfa39df911d *NEWS.md
790a01172e87e123f2db9496fc72f5bd *R/allGenos.R
b9d5cc13d29601f78ab6febaa2ae1b83 *R/checkFrequenciesFile.R
4b8ea8821221e16e571676aa7c89f864 *R/checkMixtureFile.R
18cc0055a32d8efa3715da1084c137df *R/checkPedigreeFile.R
189bd43e5ae2f2c3cfface0ad12d7e5f *R/checkReferenceFile.R
d6cbdb691c3bc73f0f20843ba99b795f *R/createDatamatrix.R
84dab9e08c96c927137bb945b076b2b3 *R/db.R
94601fd84869a33da41ebd5c1eb2d66a *R/db2.R
45c54362dd3110b33230a54d62661f7b *R/generateMix.R
4f75971ba701a09952c4cda8052e6f9a *R/globals.R
54fc131e84679c2b1b0678c1aa646df5 *R/mixLikDrop.R
a6b91756e5bb1709e715591b26bd746d *R/relMix.R
87306872b33ab27dc13ddf306f644fac *R/relMixGUI.R
f4f52df0ccf8dbc58843805cf6765b8f *R/util.R
074a5709a2275639da6d306e1f8147f0 *README.md
efd0b38921bdd4fc53044dc7933f62dc *build/vignette.rds
66cf1942ace7934160b8a6235ab3705e *data/db.RData
6b86068f85c333347b502eca5a2773bf *data/db2.RData
b4b7eaa6c072c0c3238f4c8558d730dd *inst/doc/relMix.R
1d1a0c3f6e0d7f9fdd37ba96b09053dd *inst/doc/relMix.Rmd
14eb0ebfb7cf0d1c9bdffa10b57e784d *inst/doc/relMix.html
66e35903fcceabeb26e75afe15ea457f *inst/extdata/custom_pedigree_maternity_duo.ped
8acd9540e36a117273122993635bf09c *inst/extdata/custom_pedigree_unrelated_duo.ped
3bfc38ed5c8fc3aa840a76efeb1ca062 *inst/extdata/freqsSilent.txt
f0ae636d027864003e2e5178dbff8f9e *inst/extdata/frequencies22Markers.txt
70f2c1864cd71cb2e1b8e167c8c76f31 *inst/extdata/frequencies_MH.txt
959c87b6f04213315894a6d1fdb28c49 *inst/extdata/mixture.txt
57b6f143c1d3d8f3842a26a54b94c1ed *inst/extdata/mixture_MH.txt
424b37cb54e5b82cce35b78d62483b90 *inst/extdata/mixture_ex1_vignette.txt
59661dd631294bd5dcf2369a146aae0e *inst/extdata/mixture_silent_ex.txt
b5b29b38e831ddefb524b3c4f5fc316c *inst/extdata/references.txt
e783a53c306e0c168a18836dea23f3a5 *inst/extdata/references_MH.txt
54fc05c023e1815be06d58b68e231696 *inst/extdata/references_ex1_vignette.txt
61cce6b9edeaecb1216cec6fb8901feb *inst/extdata/references_silent.txt
6edd2f6654a02106d305e7f417394722 *inst/extdata/testdata/corrupt/freq-largeEx-comma-decimal.txt
0a9dfebe159585137136b5ada175fcb0 *inst/extdata/testdata/corrupt/freq-largeEx-duplicate-markers.txt
6458be1d7625317fd3b3e9466793f3ed *inst/extdata/testdata/corrupt/freq-largeEx-non-numeric-frequencies.txt
60c30e51d8431d6621848643c59b095b *inst/extdata/testdata/corrupt/freq-smallEx-duplicate-markers.txt
2132799259d7abc385f0a7e48c740dd9 *inst/extdata/testdata/corrupt/freq-smallEx-non-numeric-frequencies.txt
8c28006f5ff83f1d3f746cb41a43f3f5 *inst/extdata/testdata/corrupt/mix-largeEx-invalid-table-structure.txt
541c864f7208f09738d4f1015c48bb7e *inst/extdata/testdata/corrupt/mix-largeEx-sample-name-mistaken.txt
b18e4880698c844c4bff961bb6d194a0 *inst/extdata/testdata/corrupt/ref-largeEx-unknown-kinship.txt
d57c5c7d2b4926eb5303763063ce6aa0 *inst/extdata/testdata/corrupt/ref-largeEx-with-tp0x.txt
26760dd00642ffe1ad0b9f64277d27b9 *inst/extdata/testdata/fixable/freq-largeEx-bad-header.txt
be36b80c2ccd2b6615c68b9f62f842da *inst/extdata/testdata/fixable/freq-smallEx-bad-header.txt
cd73cb8ecc34f651283223565b96a057 *inst/extdata/testdata/fixable/ref-largeEx-wrong-headers.txt
66e35903fcceabeb26e75afe15ea457f *inst/extdata/testdata/valid/custom_pedigree_maternity_duo.ped
8acd9540e36a117273122993635bf09c *inst/extdata/testdata/valid/custom_pedigree_unrelated_duo.ped
1535a5ffe999c59b4cfbce3517b3c7c3 *inst/extdata/testdata/valid/freq-largeEx.txt
70f2c1864cd71cb2e1b8e167c8c76f31 *inst/extdata/testdata/valid/freq-microhaplotypes.txt
6d6eec0a7bf91f67f4bed7a983c80537 *inst/extdata/testdata/valid/freq-smallEx.txt
3bfc38ed5c8fc3aa840a76efeb1ca062 *inst/extdata/testdata/valid/freqs-duo-custom-pedigree.txt
59661dd631294bd5dcf2369a146aae0e *inst/extdata/testdata/valid/mix-duo-custom-pedigree.txt
ec8136121d843c6166aac53862275b76 *inst/extdata/testdata/valid/mix-largeEx.txt
57b6f143c1d3d8f3842a26a54b94c1ed *inst/extdata/testdata/valid/mix-microhaplotypes.txt
d62813a047c0df9bf9ae6f6fe2a71d09 *inst/extdata/testdata/valid/mix-smallEx.txt
61cce6b9edeaecb1216cec6fb8901feb *inst/extdata/testdata/valid/ref-duo-custom-pedigree.txt
84320c5593953b07501ba5dd84f7a1a6 *inst/extdata/testdata/valid/ref-largeEx.txt
e783a53c306e0c168a18836dea23f3a5 *inst/extdata/testdata/valid/ref-microhaplotypes.txt
61222d8994402022b0208b796a014391 *inst/extdata/testdata/valid/ref-smallEx.txt
41a5f596bcf8c2a50f9b7e32a92fc202 *man/allGenos.Rd
6fcd167a3d0b1ce3267f37690562cd85 *man/checkFrequenciesFile.Rd
8eebefcdf895d68d3125c42e4c2d265f *man/checkMixtureFile.Rd
89bf318b327f2cd58af4c0b72f0a5eee *man/checkPedigreeFile.Rd
7648f6a36f5b2666b4f8e7a4eaf7f112 *man/checkReferenceFile.Rd
f3e6dd50b71f42c0a1752ed95c08fbe9 *man/createDatamatrix.Rd
4aa68105676c36c5c6b21dc7dcf4d2ca *man/db.Rd
11eabeb5afcf6137fd393f39f5a329cb *man/db2.Rd
18fdd948b85ffa05b1017aebb51b610e *man/generateMix.Rd
92233d0e6bf6ec7804841048f571fe3e *man/mixLikDrop.Rd
c52138251d13973db4928da12ed0560a *man/relMix.Rd
c3df99819621510b8f2c94c508146c9f *man/relMixGUI.Rd
b2dc8ce36917d343c4c65c7c945fbc60 *vignettes/contributors_ex1.png
1aa3adf0ec539eb09fc208c03cf1f1ff *vignettes/contributors_ex2.png
671e1fd29628eed8507dc161827a7398 *vignettes/custom_ped_ex2.png
66e35903fcceabeb26e75afe15ea457f *vignettes/custom_pedigree_maternity_duo.ped
8acd9540e36a117273122993635bf09c *vignettes/custom_pedigree_unrelated_duo.ped
403029ebda0f78d626c5b4fcff61c6fb *vignettes/database_crop.png
313a63d5083817ca29a12ba72ae21f17 *vignettes/database_options.png
b4ea1ac204e835ccbe93239b6ba7f596 *vignettes/database_options_ex2.png
e2571afb74879a984681a9874e44bf86 *vignettes/dropout_ex1.png
7034d431723efb6e592ccd05eac56af5 *vignettes/dropout_ex2.png
3bfc38ed5c8fc3aa840a76efeb1ca062 *vignettes/freqsSilent.txt
f0ae636d027864003e2e5178dbff8f9e *vignettes/frequencies22Markers.txt
424b37cb54e5b82cce35b78d62483b90 *vignettes/mixture.txt
59661dd631294bd5dcf2369a146aae0e *vignettes/mixture_silent_ex.txt
f0efc0e31934489717b258858e18e606 *vignettes/mutations_ex2.png
e74fb1ea0fdc7e14bc1a3c3539ad5573 *vignettes/pedigrees_ex1.png
54fc05c023e1815be06d58b68e231696 *vignettes/references.txt
61cce6b9edeaecb1216cec6fb8901feb *vignettes/references_silent.txt
1d1a0c3f6e0d7f9fdd37ba96b09053dd *vignettes/relMix.Rmd
8b4d0cf5762444fc7c480930afb1ec32 *vignettes/relMix_screenshot.png
d0bc2a23f18e76bdcca5b2bc0380014a *vignettes/results_ex1.png
15b07e1ccb795ccfa49f7c177fdc031a *vignettes/results_ex2.png
7f85b52708b53f5b5b053d0df8fe8602 *vignettes/scaling_ex2.png
