# Generated by roxygen2: do not edit by hand

S3method(plot,Binomix)
S3method(plot,Panmat)
S3method(plot,Panpca)
S3method(plot,Pantree)
S3method(plot,Rarefac)
S3method(summary,Binomix)
S3method(summary,Panmat)
S3method(summary,Panpca)
S3method(summary,Pantree)
S3method(summary,Rarefac)
export(bClust)
export(bDist)
export(barrnap)
export(binomixEstimate)
export(blastAllAll)
export(chao)
export(dClust)
export(distJaccard)
export(distManhattan)
export(entrezDownload)
export(findOrfs)
export(fluidity)
export(geneWeights)
export(getAccessions)
export(gff2fasta)
export(gffSignature)
export(heaps)
export(hmmerCleanOverlap)
export(hmmerScan)
export(isOrtholog)
export(lorfs)
export(orfLength)
export(panMatrix)
export(panPrep)
export(panTree)
export(panpca)
export(plotLoadings)
export(plotScores)
export(prodigal)
export(rarefaction)
export(readBlastTable)
export(readGFF)
export(readHmmer)
export(writeGFF)
export(xzcompress)
export(xzuncompress)
importFrom(Rcpp,evalCpp)
importFrom(grDevices,colorRampPalette)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,box)
importFrom(graphics,layout)
importFrom(graphics,par)
importFrom(graphics,pie)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,rect)
importFrom(graphics,text)
importFrom(igraph,clusters)
importFrom(igraph,degree)
importFrom(igraph,graph.edgelist)
importFrom(microseq,gregexpr)
importFrom(microseq,readFasta)
importFrom(microseq,reverseComplement)
importFrom(microseq,writeFasta)
importFrom(stats,as.dendrogram)
importFrom(stats,as.dist)
importFrom(stats,constrOptim)
importFrom(stats,cutree)
importFrom(stats,dendrapply)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,is.leaf)
importFrom(stats,optim)
importFrom(stats,prcomp)
importFrom(stats,sd)
importFrom(utils,read.table)
useDynLib(micropan)
