5091f9b3f5b1b867cd9493f211f4db68 *DESCRIPTION
81f09a061b48aaa1c6736d4b04c6ac85 *LICENSE
ba0e605cf0ce7a373b661a3516eca92c *NAMESPACE
a65c41dc208c2009a6bb29e919030ef5 *NEWS.md
910947f4e0113b2aade5492387b9f528 *R/LFMCMC.R
5d9302037cd6cc1a1e0ee5d49b92c88d *R/ModelDiagram.R
c9d2ca6af2516a5c57226a007bc97ef0 *R/ModelDiffNet.R
91fa0b7df04f213e63fdfec7467fd9e4 *R/ModelSEIR.R
d07e2efd451a2144fdeba317f4de1a7c *R/ModelSEIRCONN.R
d77e1ad6f7356c853a3d971d967729f6 *R/ModelSEIRD.R
42ac44d02bf50e8fce0745541b45eac8 *R/ModelSEIRDCONN.R
2a1afe0d7e5378bdfb45c1a19b8e2abf *R/ModelSEIRMixing.R
a29de5919ee88a31f66c1357995d1b0f *R/ModelSEIRMixingQuarantine.R
babda8e09a3fec336d480be5118e1997 *R/ModelSIR.R
4830585ee6a76281f9f54cc66e0796f5 *R/ModelSIRCONN.R
55818c8cdae5ecf47932238c6e021fa6 *R/ModelSIRD.R
1a45091a2a02351afbccd7dc0d338607 *R/ModelSIRDCONN.R
3e9f5fd00f6635ed6e325c17b4c0efa6 *R/ModelSIRLogit.R
74b42d0f24b323bde0bf844c49d09d9d *R/ModelSIRMixing.R
cf350985ee11f7531e1d92f65279c224 *R/ModelSIS.R
7739e873b4d643050a39dc6bc5da8497 *R/ModelSISD.R
5388d50e972bec84972153f9fd6a82da *R/ModelSURV.R
c954e0573f8968318e40938e23dd867f *R/agents-methods.R
3c8a7fee96a7daf98060021115690657 *R/agents.R
54c8eb0e75cea2117fab7e1929b53001 *R/arg-checks.R
2c2d93aefe64e23674da928ec04a893b *R/citer_environment.R
5036b774ed95de3f8c8d9a43bdac364e *R/cpp11.R
3692dd2fadd9641b60207ed055bbb327 *R/data.R
bce7a5f3ce27f7e2ee0ec7442cab13d9 *R/entity.R
23095030dffd7fa30a5f72e3248c334a *R/entity_tools.R
0cdc641355fc0ce771c061e68c2cd865 *R/epiworldR-package.R
5695566cae8e3b10f5ba0b3e17b58afd *R/events.R
05861b93b6f3163e159d895da561d6a5 *R/functions-renamed.R
9b79eea7821cfcd9a7eee43028f10274 *R/make_saver.R
9994c227f6417a85b1191787a7c10701 *R/model-methods.R
ff0752fce77519e2fa3e193b7024eaa0 *R/plot_epi.R
435c5c6735a48309322f5de68e75d99c *R/tool.R
649501b7784b3177851fee8d15e11abd *R/virus.R
306d6bdebcc3e77a4fb714ff7e049040 *README.md
2bfd47b80061343d316b2f60d5285e22 *build/vignette.rds
c3cded853a2388ad53569a7105d1c1e3 *cleanup
b125f20cab5bb247717c98fbfb634c00 *configure
f9e640745632842e806275e815fb75f1 *configure.ac
b2879a253dcf6b3087e824ff83b11123 *inst/CITATION
385f87ddbbb73ce5e18a5b8a8de9f704 *inst/doc/advanced-modeling.R
b4bd44a3704bbb8f8850f3e1fa30e155 *inst/doc/advanced-modeling.Rmd
59f108250fa9c2968a1065de0787c1ed *inst/doc/advanced-modeling.html
d64154176061f62e33b42ac6e52f95c7 *inst/doc/getting-started.R
dd83e4ce11b56d60ba7d9430771444b8 *inst/doc/getting-started.Rmd
50188c48ec5e2817723aea95ede40e02 *inst/doc/getting-started.html
dcde52c5b6354abd93112b5c309a8cc1 *inst/doc/implementation.Rmd
13fbe4327e92a832842fda891721c865 *inst/doc/implementation.html
b9be1fa95fc0573f3add13747d0c9bc3 *inst/doc/likelihood-free-mcmc.R
906d679aeabc1bc653e4792f5e9ac7c4 *inst/doc/likelihood-free-mcmc.Rmd
dacb7bac780ff4a7990831bf67c39463 *inst/doc/likelihood-free-mcmc.html
313b30912f0c33513fc13014a1371e4e *inst/doc/mixing.R
570ae51118c63af23eeaf7834762acbf *inst/doc/mixing.Rmd
7592713d4ac7d1e99ef5f7b952dd4862 *inst/doc/mixing.html
7ec7df0140602eeaa040e71a20671930 *inst/doc/run-multiple.R
2c8207a5c3c32d34449618954d7134b4 *inst/doc/run-multiple.Rmd
44cf165c7c1e29ce0d764e06aa4d4789 *inst/doc/run-multiple.html
8851113cecb5c7621bd85dea1c73ad41 *inst/include/epiworld/adjlist-bones.hpp
9f9eb7e90de871ad860afe306db9ae38 *inst/include/epiworld/adjlist-meat.hpp
324b6bf051e0bafe98643dca68f712b3 *inst/include/epiworld/agent-bones.hpp
4e95428734f5c0c9908857b2bfa34bd4 *inst/include/epiworld/agent-events-meat.hpp
b260e21f99010c72a019d18b99c48e4b *inst/include/epiworld/agent-meat-state.hpp
cf9e80eb9e83b414f72bda6f8ad2861c *inst/include/epiworld/agent-meat-virus-sampling.hpp
06b465f783daeb41dd43ea40b1f7e016 *inst/include/epiworld/agent-meat.hpp
022500d07ccba6cffa00b434c429e7b4 *inst/include/epiworld/agentssample-bones.hpp
4b5a55396b1f75bc542c02b8d7105780 *inst/include/epiworld/config.hpp
a337648dccbb3e98840c5ef928c2dd48 *inst/include/epiworld/contacttracing-bones.hpp
1d29e2549553509da40c16aec45497c2 *inst/include/epiworld/database-bones.hpp
8e7e86dbd2928b3fb189b8b9bb5b2bc9 *inst/include/epiworld/database-meat.hpp
f8f46142fe4c6d2b2049449ba63db301 *inst/include/epiworld/entities-bones.hpp
9cc03d8ba2d164c72fcec22fde142eb2 *inst/include/epiworld/entity-bones.hpp
e2d4f05d8d6df670f1a80bd0883d2e91 *inst/include/epiworld/entity-distribute-meat.hpp
b34289aebd4e4df9ee1b64cc78112cd2 *inst/include/epiworld/entity-meat.hpp
8335d5cf1f9ab1de0dc83e5f04a04457 *inst/include/epiworld/epiworld-macros.hpp
225e69e152fd65a98c99350c58dfd0c4 *inst/include/epiworld/epiworld.hpp
3490fe919ac35ec79e0c7b449cec5efb *inst/include/epiworld/globalevent-bones.hpp
433c67a2facc2fd9e2bbb6d3442c848e *inst/include/epiworld/globalevent-meat.hpp
c8056ff9ec181adce0ee5575e8d61f7c *inst/include/epiworld/hospitalizationstracker-bones.hpp
b50e7c6b2ca6d46223758f4791420af8 *inst/include/epiworld/hospitalizationstracker-meat.hpp
b194a51eb77f83ea68df08497f8b56ba *inst/include/epiworld/math/distributions.hpp
7982ad518beeb98b59ef5a25417bacf8 *inst/include/epiworld/math/lfmcmc.hpp
0b5bf7e34bc94ff793a791ccc87b9b71 *inst/include/epiworld/math/lfmcmc/lfmcmc-bones.hpp
4c0e7d4137cd2a6034d6cdafb8159a4f *inst/include/epiworld/math/lfmcmc/lfmcmc-meat-print.hpp
4c27ab4aee007774fe4506d6141b61ff *inst/include/epiworld/math/lfmcmc/lfmcmc-meat.hpp
718980e7117a477c639b0f6be1ee05ed *inst/include/epiworld/misc.hpp
8714460306bafc8fc1fef4327096ec0a *inst/include/epiworld/model-bones.hpp
5055c9ad460eb493a8e2081f8e81ca9d *inst/include/epiworld/model-meat-print.hpp
b41833c8e5a69227328d38c53775a9a8 *inst/include/epiworld/model-meat.hpp
4e868f4b0990d0f307a1f668b742a8ce *inst/include/epiworld/modeldiagram-bones.hpp
18aadb700ab098b1528d9dbd4a12b1e3 *inst/include/epiworld/modeldiagram-meat.hpp
3f56406e10c3461af5c57e4faeae045e *inst/include/epiworld/models/README.md
472d7d3dd04d4d79103680858a922193 *inst/include/epiworld/models/diffnet.hpp
857f6d95b13b90d2cc518f7f8526cb99 *inst/include/epiworld/models/globalevents.hpp
e3820d570e5aa23aad72ec5ccba854fd *inst/include/epiworld/models/init-functions.hpp
e8815e8ab7ab1e0d84022d448e03afea *inst/include/epiworld/models/measlesmixing.hpp
4355a458e62550142fb929d0d88753cb *inst/include/epiworld/models/measlesmixingriskquarantine.hpp
0216d5b9aaf722e8d8fd27a37d6c7c39 *inst/include/epiworld/models/measlesschool.hpp
bda25558a35b816dc232a9e8d7db0f1e *inst/include/epiworld/models/models.hpp
5603cfcc5e5986dccee86b6d5f9f4b46 *inst/include/epiworld/models/seir.hpp
c7e1ad2876db236df44b34c80f7a6caa *inst/include/epiworld/models/seirconnected.hpp
f1111812aa396584d0b0e766dbcf942a *inst/include/epiworld/models/seird.hpp
d87f1b70755fe6c7eef81231ae6841ad *inst/include/epiworld/models/seirdconnected.hpp
cdd693bb68d8a9af329537cc6035dbe0 *inst/include/epiworld/models/seirmixing.hpp
dc8e3e86313a0d8a8b02b3222d0bd871 *inst/include/epiworld/models/seirmixingquarantine.hpp
e5552ba7e59937b49ee6c1f458bd6382 *inst/include/epiworld/models/sir.hpp
6c7c90408c8680f44e6cbfa28028765e *inst/include/epiworld/models/sirconnected.hpp
d6f4b83d6827f62e8288ee4274ae8b8f *inst/include/epiworld/models/sird.hpp
e9faff36e4eea08ce971e380f910a05b *inst/include/epiworld/models/sirdconnected.hpp
7c72b746d6526efa7b8ff25c69581426 *inst/include/epiworld/models/sirlogit.hpp
bc5df610035a85c7000282bb5e55e000 *inst/include/epiworld/models/sirmixing.hpp
1382920c68d20411f74d7cb701beb437 *inst/include/epiworld/models/sis.hpp
b9fae5d8a811b29683e3bb633adea053 *inst/include/epiworld/models/sisd.hpp
352a31d09fbb486dbbf5ff92ac8ac6e3 *inst/include/epiworld/models/surveillance.hpp
d5bd28ab3e6d6686460ae2c30c4b6201 *inst/include/epiworld/progress.hpp
b04ca3acbe440d679de43a0cb9c4b271 *inst/include/epiworld/queue-bones.hpp
36f7d392c824285369d96b88ea539b34 *inst/include/epiworld/randgraph.hpp
e5deed2245693fce86ae2cf614d9f175 *inst/include/epiworld/random_graph.hpp
49f05108244a751236192545e50661f4 *inst/include/epiworld/seq_processing.hpp
0aad59a0b9421a5b363394115952cd14 *inst/include/epiworld/tool-bones.hpp
7ec3cb8c19472e0c55c531a0329af924 *inst/include/epiworld/tool-distribute-meat.hpp
a132e4025929dd59cda82da1b6d64e08 *inst/include/epiworld/tool-meat.hpp
8525acd737587b4a986fb6ebe460d7c4 *inst/include/epiworld/tools-bones.hpp
057dda5197482c7465176ec2e489d42d *inst/include/epiworld/userdata-bones.hpp
60ab5c7fbbe0306274b74bf7decf1054 *inst/include/epiworld/userdata-meat.hpp
7cf4444a3a6e3898bae98eaa2f00dc08 *inst/include/epiworld/virus-bones.hpp
bb160937c3e4581c1c05f04e6ccc4fee *inst/include/epiworld/virus-distribute-meat.hpp
efd569efeb0ae4c0632fb29dd3be9126 *inst/include/epiworld/virus-meat.hpp
45c752ac08f54a7f790cb08e39b96b82 *inst/include/epiworld/viruses-bones.hpp
0438fd1058213ccea6235ff8bc425339 *inst/tinytest/test-agents-and-dist-virus-tool.R
d1143ee506f48fd62807bb4c2d295a59 *inst/tinytest/test-data.R
5ca7938ad765c0a8d6dde3583a37fc5f *inst/tinytest/test-diffnet.R
8a1cca43a23ceb67e736eb4667974b6c *inst/tinytest/test-entity_tools.R
d544bbc8f69e8c8160f2ce15b957524a *inst/tinytest/test-get.R
17e295426524ee3de73a931435a2a222 *inst/tinytest/test-globalevents.R
a755f4266f496e5146a746c0347b3fca *inst/tinytest/test-lfmcmc.R
ae2df0e6a7b7badd5707be86b6ba2f91 *inst/tinytest/test-model-diagram-files/multiple-files/0_transition.csv
8bfa733229324317a9ae1db682b9033e *inst/tinytest/test-model-diagram-files/multiple-files/1_transition.csv
b6cabad9701ca7a009417c59b852b4d7 *inst/tinytest/test-model-diagram-files/single-file-transitions.txt
ebc458ca22f98c30ae2a7d9affe81846 *inst/tinytest/test-model-diagram.R
73f53cc038516e50fb59e70da86a1e4c *inst/tinytest/test-model-methods.R
55e8f61b15a7eee4f9117ef9f1450968 *inst/tinytest/test-multiple.R
aa1558ad52cc2878cdcf8bfddbe77150 *inst/tinytest/test-outbreak-active-cases.R
83e80a48af23b2d6c01f891b29e30b54 *inst/tinytest/test-seir.R
f4a89661187f0c64c69766a7f8d21948 *inst/tinytest/test-seirconn.R
e1d18ec00153f7bda879a977c8fb4750 *inst/tinytest/test-seird.R
f0ed7c31f724129eb16fdce1976133a8 *inst/tinytest/test-seirdconn.R
86961409d7a52025bed5f0d91dac2c4c *inst/tinytest/test-seirmixing.R
3ae929a1a535605f907f37f6fdd29420 *inst/tinytest/test-seirmixingquarantine.R
4c482f7bd6742b859158a9db5cbad7ed *inst/tinytest/test-sir.R
63836df1f1c2ce88cd555b7332a3b535 *inst/tinytest/test-sirconn.R
637162e7077fdd00df1b85fad2ad7be2 *inst/tinytest/test-sird.R
96c201184423485f95709b278c5fc710 *inst/tinytest/test-sirdconn.R
e46b6e6b89a400e410729424ce2fe9de *inst/tinytest/test-sirlogit.R
eb3e49b10fa8b751549195d2040bf700 *inst/tinytest/test-sirmixing.R
ca2809ab242832aa27afe125b1082bd3 *inst/tinytest/test-sis.R
8610208c7520a7baff0cfb0661555fdb *inst/tinytest/test-sisd.R
a1c461186d25fe86694c60e34b484a60 *inst/tinytest/test-surv.R
c18999bb240f65479d030c17837ee45d *inst/tinytest/test-tool.R
4dd5fc2b7bd2a1c850c89ae1c2d59988 *inst/tinytest/test-virus.R
2605987d994668baac57904278b5adb5 *man/LFMCMC.Rd
df2b89b107db18e35c503bc402bf8d33 *man/ModelDiffNet.Rd
627ead26141f021b53bc4fae4544a417 *man/ModelSEIR.Rd
c25ac097cf9cae290156db4f9029e4ee *man/ModelSEIRCONN.Rd
06115649179c63e46e3d7091da486a00 *man/ModelSEIRD.Rd
ee476ac58eb5c8fdf78a368e970bb825 *man/ModelSEIRDCONN.Rd
7d5414da3fb13ee8d67b97d25ac85344 *man/ModelSEIRMixing.Rd
a2381fac8ad5c52394a367d448983982 *man/ModelSEIRMixingQuarantine.Rd
433afb718981a67802cad9e011df71be *man/ModelSIR.Rd
b27288c88b7b1b0c0530faf2c43a838e *man/ModelSIRCONN.Rd
adeebc81bdb9af42e8d1c59d6bc850ba *man/ModelSIRD.Rd
1485cca7d8441dcec8e3fc44407f5473 *man/ModelSIRDCONN.Rd
7c06d93f3793d0cf0e312e06247d880c *man/ModelSIRLogit.Rd
459b57fd5a72cf0d183c36a4d1dea260 *man/ModelSIRMixing.Rd
d3814043404998e9bfd85ed469f14a03 *man/ModelSIS.Rd
e8f3e5e39880eef7ed46ca965a7dd464 *man/ModelSISD.Rd
42a2d52037d60244033f6cb70f8f2519 *man/ModelSURV.Rd
a01b9bcb750b5068357acb2283674759 *man/add_entities_from_dataframe.Rd
080a1ce91d0b94da235e62d22eca74af *man/agents.Rd
f89997f0d34a3e740a63d5dd859cad9b *man/agents_smallworld.Rd
4e5abfdadd92e150429e9befc2e8e7de *man/entities.Rd
28e910c82534ab77d3c7f7ca6e70698b *man/epiworld-gentime.Rd
89d7a46fc59a35f6de050536aa044243 *man/epiworld-history.Rd
d0323a3d48c61168b9339ef172862f8f *man/epiworld-hospitalizations.Rd
a25ef2a4ec09ed18edfbfaf78c5cee90 *man/epiworld-methods.Rd
0a1c953a151f87a8efb20d990d8fa556 *man/epiworld-model-diagram.Rd
fc66ab9ea2d3e488a604109a03abc372 *man/epiworld-repnum.Rd
4855991120b796a7ab3603e76c2ea663 *man/epiworld-summaries.Rd
32e6b70bf5b33a240c165308e9cf0fe2 *man/epiworld-transition.Rd
8fdf57d23e55d01380e0c0a0d5fddb9a *man/epiworld-transmissions.Rd
47fdf3d2095728ae8059b46a9f06c807 *man/epiworldR-deprecated.Rd
00971d9c8213d7b9b2f7e5d151f251a7 *man/epiworldR-package.Rd
971712356e80a9d94872d223281cd145 *man/figures/README-logit-model-1.png
a146298eb6161748658fdd4d309055b3 *man/figures/README-multiple-example-1.png
daee0b1e19dd6e505c0190cfba085462 *man/figures/README-seir-conn-figures-1.png
6ca647e965dc3f38846777f8e8f71fc7 *man/figures/README-seir-conn-figures-2.png
c0fe6901cdf8fb553ee31a4f1570bbb1 *man/figures/README-seir-conn-figures-3.png
fae6a2d83acbcb509c0b106c017e1763 *man/figures/README-sir-figures-1.png
ce88e44c7c1b0eff09ba21d60f9bf656 *man/figures/README-sir-figures-2.png
7f11115a54a57ad71edeab5d52824015 *man/figures/README-transmission-net-1.png
f3be6da9bd595e33b48ec82b7ef282cd *man/figures/README-unnamed-chunk-4-1.png
37d7a1e9a0d86050fb823b25313c0088 *man/figures/README-unnamed-chunk-4-2.png
928d113b4860424d2a8a4ab3b389e2c3 *man/figures/README-unnamed-chunk-4-3.png
e7928e20cf7cc7fa1a9f5bfb9d41b37d *man/figures/README-unnamed-chunk-4-4.png
359e8a52f6d6ac0a06376c9573e5ef04 *man/figures/README-unnamed-chunk-6-1.png
23f99490f90002481630033a4b8cb79a *man/figures/logo.png
72cc4d07357c30666f50cf33e818e4ff *man/figures/measlesmixing.png
be6ceb357bc33ee08b1389cf88136b32 *man/figures/measlesmixingriskquarantine.png
13df4b46e5f48e8ddec7dd2cbacd90d1 *man/figures/measlesschool.png
42ef43cd73245ec53b7ecbceb38b922f *man/figures/seir.png
42ef43cd73245ec53b7ecbceb38b922f *man/figures/seirconnected.png
b299b7f399cdc80abad293e40e342991 *man/figures/seird.png
b299b7f399cdc80abad293e40e342991 *man/figures/seirdconnected.png
42ef43cd73245ec53b7ecbceb38b922f *man/figures/seirmixing.png
2d8d8d5c40773c19b643d5161678313a *man/figures/seirmixingquarantine.png
8c1e466d9127b3578947d21210c0afd7 *man/figures/sir.png
8c1e466d9127b3578947d21210c0afd7 *man/figures/sirconnected.png
cced313aeb838af2b121859367ba29df *man/figures/sird.png
dae105c4305e396a8de4438a67a5e547 *man/figures/sirdconnected.png
8c1e466d9127b3578947d21210c0afd7 *man/figures/sirlogit.png
8c1e466d9127b3578947d21210c0afd7 *man/figures/sirmixing.png
6d9cc20119046856af5378a8748dc42b *man/figures/sis.png
6d683ec2e44bbc599c59b278e9e0de78 *man/figures/sisd.png
ccde361e1efbc81c896fff645bf0ac01 *man/global-events.Rd
7a40cd7b02ea1fb330a96d789be3649d *man/run_multiple.Rd
95e4f94a05494fe8a022a288d3583788 *man/tool.Rd
e3b064c4d5557ec660e0c8185158880d *man/virus.Rd
26991b954bb977e67f7cfbf45ce78536 *src/Makevars.in
1b08ff28802f9a58ccebe7238e8ccc24 *src/Makevars.win
d1a2d6045a1537f9df9b9a101c2af436 *src/agents.cpp
59c52e643a015b4f63c7793b98c32b18 *src/cpp11.cpp
8253db632c6f348a44e9260659966429 *src/db.cpp
cee13bf33ffb832eff983f1650c869ab *src/entities.cpp
5f1b3dde69341cbc72395947a2ca05cf *src/epimodels.cpp
f3dc32c75ef7067e97e8bebc7d6c3acf *src/epiworld-common.h
ecbda6df804960b432cf2fff5e68ef02 *src/events.cpp
9f4dd3b43569da688f94ded8b192e664 *src/lfmcmc.cpp
aadaa682ffe2116e126793a1cf42c408 *src/model-diagram.cpp
31caa16b275945e8ca95f5b89e7fcfc2 *src/model.cpp
fd896b88db370958ca0e3cdb943b9e37 *src/tool.cpp
38bf7abaca6945c49be46e195f7ff901 *src/virus.cpp
e9a0472bb8cb9157ec6d19009d9ec8ed *tests/tinytest.R
b4bd44a3704bbb8f8850f3e1fa30e155 *vignettes/advanced-modeling.Rmd
dd83e4ce11b56d60ba7d9430771444b8 *vignettes/getting-started.Rmd
dcde52c5b6354abd93112b5c309a8cc1 *vignettes/implementation.Rmd
906d679aeabc1bc653e4792f5e9ac7c4 *vignettes/likelihood-free-mcmc.Rmd
570ae51118c63af23eeaf7834762acbf *vignettes/mixing.Rmd
2c8207a5c3c32d34449618954d7134b4 *vignettes/run-multiple.Rmd
