88968f3a00490f3b2892ff46bfae8573 *DESCRIPTION
4d1144c2f6fc319be64dc8e75139cfab *NAMESPACE
ca41eec57e0fc6fb437d6638bc1d3b2c *NEWS
096bcebe1d739e701ea8d3a6d08ed116 *R/PeakErrorSamples.R
b87e928ce4b813e20b6a671fcd5e1215 *R/PeakSegJoint.R
91ca416753d0caf18ad037e8d0368b9c *R/PeakSegJointError.R
e6804a90f52bdb99dd910beef93dbd37 *R/PoissonLoss.R
59e7327018cf7faf2ff03df4cbd6e36a *R/binSum.R
9a1ab188646213e1cdc0ba01686a68a9 *R/clusterPeaks.R
9e1ff6f5da6c04d58f4e61d67bdbf123 *R/features.R
aa3014f6ec33f7a0333bb1cb8c770417 *R/multiClusterPeaks.R
b002f1979e35d061b57cc2cc0b14d53e *data/H3K27ac.TDH.MMM4.RData
f2b427b40549be87edaa3858fc1ce917 *data/H3K36me3.AM.immune.chunk21.RData
4f6cc61618f17908081449150f6a67f9 *data/H3K36me3.TDH.other.chunk1.RData
e4d3e43fdd280f1793ba84894e8ca6f9 *data/H3K4me3.PGP.immune.chunk2.RData
2ab0805c0fd38660cc70f862d97a412f *data/H3K4me3.TDH.other.chunk8.RData
0a72957dee8d17d1210904fa9d6e60fd *data/chr7.peaks.RData
6795f191ae1cdee8f8467b000e34282b *data/demo.profiles.RData
657da13badcdfb8762752aa0dd7c8a36 *data/peak.at.profile.end.RData
ee3cff368e7e71ff5d8a2d56f56b93e6 *data/peak1.infeasible.RData
b92230f28c9828f0b9c678da35c4c851 *man/ConvertModelList.Rd
883f2edd1708f0cf4ea873d112b8a014 *man/GeomTallRect.Rd
2fad93d8d2b2671cbde6f20120dc867f *man/H3K27ac.TDH.MMM4.Rd
ead8334f8e5271ae4d77e9429cdf082c *man/H3K36me3.AM.immune.chunk21.Rd
8d02b661630363b153cffa9b0578bcb2 *man/H3K36me3.TDH.other.chunk1.Rd
6182263f56af7288db23c1487bd3a6ea *man/H3K4me3.PGP.immune.chunk2.Rd
511b6025e52cafb039fe847d19c95810 *man/H3K4me3.TDH.other.chunk8.Rd
a19e5f4fc7d115f653b075bb5d69e80c *man/PeakErrorSamples.Rd
21bb13c44df637cef5fd00e64cdd83d1 *man/PeakSegJointError.Rd
05bd1fbfc83dda0e45f7d121baf0313f *man/PeakSegJointFaster.Rd
127d6a43bc58b4b7905ffaccf0a061cc *man/PeakSegJointFasterOne.Rd
905ccae297f6b4b14e064bbbd5bd5555 *man/PeakSegJointHeuristic.Rd
3be4751f495f03d5c25e622139486797 *man/PeakSegJointHeuristicStep1.Rd
8c2e013157a757382937e1decbb9d7a5 *man/PeakSegJointHeuristicStep2.Rd
364629a4d3a60231e8b348a22d2f1bab *man/PeakSegJointSeveral.Rd
67f1beb4a7be105be179320e39b7993b *man/PoissonLoss.Rd
3ea6cd4ffd6830d29af970ee2f9cac4b *man/ProfileList.Rd
f33498ae3b688b43dd348582b0945c4a *man/binSum.Rd
28ce631d2f11e97c0e5ebf38922158da *man/chr7.peaks.Rd
fa61bf2426807b2ff1aa10522bbee6bf *man/clusterPeaks.Rd
f1fecd943fa4b369eb0c054a5909f4a9 *man/demo.profiles.Rd
053651ad9d4491fb0e7dd994d204a85a *man/featureMatrixJoint.Rd
9d378f9c707444a8f83bb41634b03a1c *man/multiClusterPeaks.Rd
d248470d2dc922b01dce3dca80882ccb *man/peak.at.profile.end.Rd
e945ec0c2eff356a3fe6a22fcc071a32 *man/peak1.infeasible.Rd
d6b3ee07061da425b570625b3db566be *src/OptimalPoissonLoss.c
79bfdc9fa15bd4c61f7b51558cc24104 *src/OptimalPoissonLoss.h
8fc7c71bdf9684f90b1d02c1050279af *src/PeakSegJoint.c
d4ac441bc3d25d9a6f7fcd1330341128 *src/PeakSegJoint.h
c67f1ccfa52d94562bb4002bb84d7765 *src/PeakSegJointFaster.c
1cecea9b718d09840d28a41b567addfd *src/PeakSegJointFaster.h
52f62b65e3185eab7b5017dedd6a7288 *src/PeakSegJoint_interface.c
d77130674277120b6bbbc28a30541bd0 *src/binSum.c
99bd9e5e0878499e0fc6f21adb37d9d9 *src/binSum.h
afdf97a9f8ed5441c7b387eab12854d2 *src/clusterPeaks.c
8def9336fd0a6c027be2ee002e297daf *src/clusterPeaks.h
451b8c676c91e649140c9dcf3ef7aa31 *src/multiClusterPeaks.c
6061dc4217cc2c3944cea5d5fdc3b557 *src/multiClusterPeaks.h
26e80c532d10bff764e6ed8367e96161 *src/profile.c
fe3d08ba8e2bf835d9f182ec5c35ce62 *src/profile.h
014dce96a0b49e245759b94ac2d0e052 *tests/testthat.R
c9ea6c52103c411c74e9cdddb099579d *tests/testthat/test-functions-Faster.R
3478959b5118782759fd706a475fdff8 *tests/testthat/test-functions-PeakSegJoint.R
b32f519dae46b69e3c499a11f58b175d *tests/testthat/test-functions-binSum.R
cef9a269a64c56954f7937902d1b1929 *tests/testthat/test-functions-converted.R
13fb88d4cdc1ad123c1c46cff93be014 *tests/testthat/test-functions-features.R
646847df6b77d9c2f4ebf0481272abd7 *tests/testthat/test-functions-likelihood.R
43540c4aa60add87f2a5d6f82ff12a00 *tests/testthat/test-functions-no-zeros.R
cd4954c88670a7c665750af45902067c *tests/testthat/test-functions-trivial.R
