b791f1a76cc0db15f88ac57eb35fe3a1 *DESCRIPTION
4153e71cd0e2579023584758e5e95a5b *LICENSE
2b1d327ca7e2844813ba74d75d04ff00 *NAMESPACE
d40ae59fbbeb3d6f385b1308e62ad2e9 *NEWS.md
78064a90eac02344a45fadc25301ca27 *R/RASTtogbk.R
6f1836ffbf838d31249097ee10dc4193 *R/analyze_OrthoMCL.R
49baa0804aefc4b713e3dfc7b6e187ec *R/doc.R
1b70e011d2433a0879c8b36f81b35f01 *R/format_MCLfastas.R
9ffeaf6ed59252a2c2c3769f1bd4ed80 *R/format_afterOrtho.R
072f45337eb7dcb56954fc59509dfd8f *R/graphics.R
5a9142ca287dcf7e1366767eb7420a3e *R/join_repseq.R
617c787edfe566c260022801046153d5 *R/printCOGseqs.R
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76aee771bdea7d6e7fcb579fdb47468d *R/write_mcl.R
676f96f67e511e863ea0a3259e7e4559 *README.md
ed1683b2af8ec03cd752def535919c73 *build/vignette.rds
dad53b150eb75ea550202a0eec68657a *data/after_ortho_format.rda
ec1601bbb7f4fd81a5ac7108597aab29 *data/after_ortho_format_grps.rda
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dd8b0081417995e791b677fb8eb07847 *inst/extdata/RASTtogbk/lfrc.fasta
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55da80470bf5768a8038e5067a5bcac9 *inst/extdata/RASTtogbk/lfrc_out.fasta
27b2008e36ca4fd785bc97c7fea2b453 *inst/extdata/fasta_dir/MCLformatted_all.fasta
bda9c73cf0014d32756f4c0b3c667ad5 *inst/extdata/fasta_dir/aace.fasta
f354575f10aef3d7d1bc5976d97da975 *inst/extdata/fasta_dir/apap.fasta
60ae714d36d9a9e861c9909c4adc7f8d *inst/extdata/fasta_dir/apas.fasta
05189937d40e8b0f52dbbceaa60856c3 *inst/extdata/fasta_dir/atro.fasta
3af4570dea812fc6f382e0fec03a497c *inst/extdata/fasta_dir/bsub.fasta
f2c30aa4d895619dd4e694b292e95fb2 *inst/extdata/fasta_dir/dmos.fasta
a5328fd0c069102ad2b6132009db219d *inst/extdata/fasta_dir/ecol.fasta
c8b98acb06b787f63b8018855a521a15 *inst/extdata/fasta_dir/efao.fasta
1e30a07475af9252b6f9ec52184d718e *inst/extdata/fasta_dir/efav.fasta
fa5f7012990d03e272bdcae81a0dc89b *inst/extdata/fasta_dir/ehor.fasta
c9ad6702dcd775323df222602c860ff8 *inst/extdata/fasta_dir/geur.fasta
68960dd8c52aa64791303b875c660244 *inst/extdata/fasta_dir/gfra.fasta
7a0f3cf208c41933274561a33ef6e7d9 *inst/extdata/fasta_dir/ghan.fasta
6d52327ca9da89c18546027f4ece4d14 *inst/extdata/fasta_dir/gobo.fasta
db9296406d5cf8bae11b290a500587e3 *inst/extdata/fasta_dir/gxyl.fasta
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9ffc9c2c6740caf85f952b8777febdd4 *inst/extdata/fasta_dir/lbuc.fasta
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a2128a34b117814bdad1befe0e3ba088 *inst/extdata/fasta_dir/lfal.fasta
4ae51ea8316564f7790e165793d2b9cd *inst/extdata/fasta_dir/lfer.fasta
b118c8616ec5acedfc564b2dda544eae *inst/extdata/fasta_dir/lfru.fasta
f60306264842412cb51f3d856cf2369b *inst/extdata/fasta_dir/lgas.fasta
a6dadf01412f75ec46dc7623878c37c3 *inst/extdata/fasta_dir/llac.fasta
1db6b6aed44687c157e6df5e79e5bac5 *inst/extdata/fasta_dir/lmai.fasta
8a9fa53607fbf6a1fc600265faa96806 *inst/extdata/fasta_dir/lmal.fasta
13b2215258726e0fc7fbab6ca9b59c3d *inst/extdata/fasta_dir/lpla.fasta
1c763c3071672f9e96cd4ae3975d4ca6 *inst/extdata/fasta_dir/lrha.fasta
609a675da30d454905cf91e98c18378c *inst/extdata/fasta_dir/lver.fasta
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53b1e28f523e0e46c66946fe361b2575 *inst/extdata/fasta_dir/smar.fasta
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6b74dcb934eaa8bcbb783bac0fc7535d *inst/extdata/fasta_dir/spar.fasta
4d1018a1bea7d563e8ade03e35718095 *inst/extdata/fasta_dir/swit.fasta
36a3a734b441cc670c2c834c6bb76ae3 *inst/extdata/groups_example_r.txt
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5c4f7d20ad64e76bb3b07c88a453cf47 *inst/extdata/muscle_tree2.dnd
7c1a49e14c9a4ff52ff9c904deae5567 *inst/extdata/orthologGroups.txt
7d5f050fd18265cc0c3d7ee7284be7d8 *inst/extdata/outputs/OG5_126801data.csv
da539412a483460e7978fff9d29b3b10 *inst/extdata/outputs/OG5_126968data.csv
8b97f57dd5aa647a9b35eef92fb498e1 *inst/extdata/outputs/OG5_127007data.csv
65776934a8e4f8f336d5135d2b86b1d5 *inst/extdata/outputs/OG5_127151data.csv
1efc3846937bd10f928deb20c60ff84e *inst/extdata/outputs/OG5_127267data.csv
4662d79567022188ae1b632f64f750d3 *inst/extdata/outputs/OG5_127532data.csv
a8efd6c00ca6dfa01490049315e0ff53 *inst/extdata/outputs/OG5_130166data.csv
d790fee5d1c0543c706263bec4a16845 *inst/extdata/outputs/OG5_130794data.csv
e237d399f19dc0c98989d3e7d9f37403 *inst/extdata/outputs/OG5_131047data.csv
ed383cef803b4a095d340a4e160a79c9 *inst/extdata/outputs/OG5_131512data.csv
a38ae5599030bb83f9c38f165038cf41 *inst/extdata/outputs/OG5_132018data.csv
53203f15c2e59acfcc988d7852fcf8b7 *inst/extdata/outputs/OG5_136502data.csv
d77025561564ca6ce2ab98f418c37115 *inst/extdata/outputs/OG5_138794data.csv
19ef6405fb1823e527deedc25300732e *inst/extdata/outputs/OG5_163100data.csv
f99c66c99c177cf6b7c7e9d9f417f5b3 *inst/extdata/outputs/OG5_164941data.csv
30006a13ed3b05f72dfdcd3fa18b9332 *man/RASTtogbk.Rd
2af33eff93af9457b3a148c3ef1ca5e7 *man/after_ortho_format.Rd
fb4dee7e7569803200f0e08eca92acae *man/after_ortho_format_grps.Rd
eab9a0ed9714dcca734c3c67857e8e68 *man/analyze_OrthoMCL.Rd
79380d31a05a9413c5adffe98eaa747b *man/format_MCLfastas.Rd
6a654a486f03dbe985ab7abcac5c8d10 *man/format_afterOrtho.Rd
2436f75ff12bced2b094dc6d4ac1cdd8 *man/join_repseq.Rd
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81f2357282f3b878e2e88eabe5a3064d *man/manhat_grp.Rd
750fb46393499d89e63be54931770c1d *man/mcl_mtrx.Rd
89f3c93009aaedfe3485f2d70e5c83ac *man/mcl_mtrx_grps.Rd
6a9be6631236c1326e28e5218ec35d92 *man/pdg_v_OG.Rd
72b3b0ab755023b53ffb40d508ece414 *man/pdgplot.Rd
fe4a57c0627264e8a7fe634a9bedcc66 *man/pheno_data.Rd
80343d7e9189b052011e55f2a60b15ee *man/phydataerror.Rd
5864fa5fc487aa21c85570f6fe3ca4c7 *man/printOGseqs.Rd
7956157d8c5905083a0bf16ada8d2b83 *man/qqplotter.Rd
8ff9d3bd858e282264295d1036279916 *man/starv_pheno_data.Rd
948c808c1123a3a25907bfc690d4f200 *man/surv_append_matrix.Rd
d287a2a7c493f24a219c903b5b651a86 *man/write_mcl.Rd
63bc58cb76898cc875e06ecf1e4bae5b *vignettes/using_mag.Rmd
