e8832ec23b928272e25a5f5508391e25 *DESCRIPTION
620dec5abe35747430a215d8d65731bb *NAMESPACE
3f730ab29544fc1d63946a50242f3a42 *R/DEploidR.R
7efdf7afe8931c93c9c3cdf32a85fb6b *R/RcppExports.R
856a9b3317faac53312a512e049ca0f9 *R/dEploid.R
d3fac2cb88aea885efd78a57cd3b8a06 *R/dEploidPlotly.R
86e0f5d855f8f024f1be4513711c735d *README.md
3d5ac8ca720160834e8b1aeedfa70f91 *build/vignette.rds
461e2dc267742100128d50cd74e757e2 *inst/CITATION
01c90976b229646ca9b46399709688e3 *inst/doc/dEploid-Arguments.R
2cbf6a6a60e07984981e6a2329578f8e *inst/doc/dEploid-Arguments.Rmd
09e7d0e800948d08935603b27f5e742d *inst/doc/dEploid-Arguments.html
2cad08193815864d8a26f8ac768ef199 *inst/extdata/PG0390-C.test.alt
07eccfaeb952de9e0460bcc12d457b22 *inst/extdata/PG0390-C.test.ref
cdc601c1d8d4eec2bc80512eb8ee6b6b *inst/extdata/PG0390-C.test.vcf.gz
a18778772a21e2614f37800bf1e3d22c *inst/extdata/deploid.png
d5122a085c423ba8bdeff856b6a6f768 *inst/extdata/labStrains.test.PLAF.txt
a865c12e4c27f049106f134b695a0b82 *inst/extdata/labStrains.test.exclude.txt
58b29caf285f90a0900f2b04443ec465 *inst/extdata/labStrains.test.panel.txt
76a896123fd1166011d6ae5ddbfb5930 *man/DEploid-package.Rd
281d55ad310144f7d9779d4ba9a4b597 *man/computeObsWSAF.Rd
a7dec0cf819f7b734569760e93f0a0df *man/dEploid.Rd
d5231f506efc96d0257c95faf60f4c1a *man/extractCoverageFromTxt.Rd
54c88b77f9b79b1402d0d5b932416e90 *man/extractCoverageFromVcf.Rd
3b94e99a025a308b8e6df581b33125b6 *man/extractPLAF.Rd
1d929973d73c6742bd223e1ffc07b15c *man/haplotypePainter.Rd
d27b68362961277a9dae5718e025b2ee *man/histWSAF.Rd
c15c6c7d70701d6d454e46553ec8f3fb *man/plotAltVsRef.Rd
4a719f9ddd20b1604d7ac33f64c9c251 *man/plotAltVsRefPlotly.Rd
2e3ce3260c47e734c3d0aa28cd153abf *man/plotHistWSAFPlotly.Rd
aa2e2c6ae4087fd61777c9fa17742152 *man/plotObsExpWSAF.Rd
ab1b443b0af8bf81d85e063f3556e80f *man/plotObsExpWSAFPlotly.Rd
8f91e514e27c39a978351e2a9976ddc6 *man/plotProportions.Rd
499310d8b94430a9ff1172326bf9f3d5 *man/plotWSAFVsPLAFPlotly.Rd
57351dea18413509031f78bd2b106dae *man/plotWSAFvsPLAF.Rd
c3adb6d6823db1b19840143fa58ba349 *src/DEploid/codeCogs/asympt_expn.h
9c4cc52f7742819084a453fef38e0288 *src/DEploid/codeCogs/errorfn.h
09168cd629e28c9591a8b7a276acc1e4 *src/DEploid/codeCogs/errorfnc.h
23d6452106b5561002ce0c10f3804ef4 *src/DEploid/codeCogs/errorfnc_exp.h
dd8dd57dee7f3c8d2b45dbf03e8c5163 *src/DEploid/codeCogs/expx2.h
2f905303a07a8e69bbd46a3eedbf34eb *src/DEploid/codeCogs/gamma.h
5a369c47236d061678c4e2ea954a0866 *src/DEploid/codeCogs/ln_add1.h
820a1ecd84ab39df9204e9b1e59b8873 *src/DEploid/codeCogs/log_gamma.h
830e4770c3ef6b5afbd962bc89786b34 *src/DEploid/codeCogs/logbeta.h
4d3024ecd41e77f173a95d7ff2bc55ee *src/DEploid/codeCogs/loggammafrac.h
89734db2e095786f0fd83d721b0ee208 *src/DEploid/codeCogs/loggammasum.h
ae7e51c1268072067ffb113c577f5bb6 *src/DEploid/codeCogs/machine_epsilon.h
ccec2bc4b1d1436416711e52b16ef3e0 *src/DEploid/codeCogs/mersenne.hpp
2f8d156a5ffa6d1f3bb302af68b59090 *src/DEploid/codeCogs/poly_eval.h
3ba8122e26b392c415edec3c7b3ac888 *src/DEploid/codeCogs/randomSample.hpp
94c33b48dee38eb7bdc87638e718e09e *src/DEploid/codeCogs/stirling.h
a3585d8d0b267c7076cc835be837bf5f *src/DEploid/codeCogs/xsub_ln_add1.h
b822188831563922209c5cc0d82499d6 *src/DEploid/dEploidIO.cpp
71263fc8d2ef0b0c38e6ddaf0d340b34 *src/DEploid/dEploidIO.hpp
47c3ccc7c67427b403bf67412c19825c *src/DEploid/debug/mcmcDebug.cpp
f2bc5a44cdf66b26c3657897be89c337 *src/DEploid/debug/vcfReaderDebug.cpp
2ab6797644a0dd90391e0dfa38ac9a33 *src/DEploid/exceptions.hpp
aa0d0dbab21a8daecaf3a90cc3986f65 *src/DEploid/export/dEploidIOExport.cpp
391762551ff34224643d84913249c130 *src/DEploid/export/dEploidIOExportPosteriorProb.cpp
8511cebf54bf4ab7ca4b0835b8a06104 *src/DEploid/export/writeMcmcRelated.cpp
0014dc9c1f11529ce9aff9e4d87b9b9d *src/DEploid/global.hpp
7fbc338309ac38fefcd64b04bb903e34 *src/DEploid/gzstream/COPYING.LIB
d632447d46c9b1d6ab0103de7a665034 *src/DEploid/gzstream/README
ba512bdbb2404b95b4303f226f9d8ef8 *src/DEploid/gzstream/gzstream.cpp
99d59b3af2c3974f943e118556645888 *src/DEploid/gzstream/gzstream.h
caa5ea78d04f32a480fa6d4008817cec *src/DEploid/gzstream/index.html
78e2cca98f5d11a43af84eccdd9fb96e *src/DEploid/gzstream/logo.gif
72767782fc756a7855f92361e949b499 *src/DEploid/gzstream/test_gunzip.C
ade409024dc2511702be4b25cec98304 *src/DEploid/gzstream/test_gzip.C
bbd0b64c69d158664fc7f806df5b85b2 *src/DEploid/ibd.cpp
0d527d3a676ae668cebc41b55bfd810e *src/DEploid/ibd.hpp
be3900f55cf510e4011fc09aebbd469e *src/DEploid/lasso/dEploidLasso.cpp
70b70d4a42bfa2673e799f8eb6697576 *src/DEploid/lasso/dEploidLasso.hpp
8d7d21d3dbfd7eeda6783eeb172dc00d *src/DEploid/lasso/dbgmacro.hpp
b1243a1e6ca579543c49bc30cfd79dce *src/DEploid/lasso/lasso.cpp
e77974455e21e3fbc36f3d66a1464cc3 *src/DEploid/lasso/lasso.hpp
a60b6085198e7396d5392472e7d8f3ad *src/DEploid/lasso/lassoDBG.cpp
196cfe16ca992fb0e11539bed7372329 *src/DEploid/mcmc.cpp
c8a50d58b170f744e3e764446bf2512b *src/DEploid/mcmc.hpp
94a7d14022d6977963a596d991cf49cc *src/DEploid/panel.cpp
738a29be3df64f963520a408ba5ab91a *src/DEploid/panel.hpp
a6765fb4db45924b1d3b2d7ed6d5b0ae *src/DEploid/random/fastfunc.cpp
1a598d9c9df966427a64ef6a74ce56d5 *src/DEploid/random/fastfunc.hpp
d7ee5456f67c91bd7da907001965dd72 *src/DEploid/random/mersenne_twister.cpp
5c40c783d72b75abcd7a5264a74d4c1a *src/DEploid/random/mersenne_twister.hpp
9563d50543ff7687795b66906c787a9f *src/DEploid/random/random_generator.cpp
ad21a81bdcb9369d4c7f9b2d54cb37be *src/DEploid/random/random_generator.hpp
7e510de097c6a4b82343f8dbaba4cabe *src/DEploid/txtReader.cpp
9e33ed23ec1e99b143de552cb4c47f08 *src/DEploid/txtReader.hpp
8fa54dd0674c17dd90c0f99607b3640f *src/DEploid/updateHap.cpp
3c04f03a2e9e8c022ff6138ce0f5dd67 *src/DEploid/updateHap.hpp
177058e9bd41a4d0905b8cc8b6a9fa50 *src/DEploid/utility.cpp
20acd35532218e8d275c8b1aff30df36 *src/DEploid/utility.hpp
6befb905c2f2db83e6703cf5de751983 *src/DEploid/variantIndex.cpp
1a0ca7691a0ad14a2f03b23511337fc7 *src/DEploid/variantIndex.hpp
87165591ce55df9e0352b0833d5fd14a *src/DEploid/vcfReader.cpp
35b5749b31bae39d02661b505450f46c *src/DEploid/vcfReader.hpp
c4002d59b81406e8bc6fe9eb5535e2c7 *src/Makevars
c4002d59b81406e8bc6fe9eb5535e2c7 *src/Makevars.win
2b97b24c7193853b75825b3fb76daa7e *src/RcppExports.cpp
d8d7321b0ef6566648a7f7c25b3c775c *src/dEploidr.cpp
c5cc16e00e5cd1b8150a274c1fcfd3ad *src/init.c
d9780788cb9e10ae63d0cfb4ce81703d *src/r_random_generator.h
eedb9b59a5a966b63e9e82308caf7349 *src/test_exports.cpp
e095660d571c0f3ef91ce1211ecb7f76 *tests/testthat.R
9d2d8716411d1971ee55a3faca5fad34 *tests/testthat/test-DEploid_tools.R
e6096201933e4b6042e165bca5d80db7 *tests/testthat/test-dEploid.R
f66b335af2d854e56592824fc8df7a0a *tests/testthat/test-r_random-generator.R
2cbf6a6a60e07984981e6a2329578f8e *vignettes/dEploid-Arguments.Rmd
