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| BioIDMapper-package | Mapping biological ids and linking to external data source |
| bio.convert | Main Interface for Mapping |
| bio.link | Link Between BioIDMapper and External Data Sources |
| bio.select | select subset from mapped matrix |
| bio.sum | analyze mapped ids |
| bio.type | Get the biokey number this package support |
| BioIDMapper | Mapping biological ids and linking to external data source |
| dbjumper | Parse mapping pathway |
| geneMap | Mapping between NCBI |
| glist | Genbank Gi list |
| parse1 | parse the returned result from NCBI |
| parse2 | parse the return result from UniProt |
| plist | PDB id list |
| processMessage | Return a message |
| proteinMap | map among protein ids |
| ulist | Uniprot id list |
| updateTerm | Update Term |
| validate | Delete extra copies from matrix |