e463794a8c1f9115f903e2c320241907 *DESCRIPTION
bc6dc567e323431fe65668a75863c4e8 *LICENSE
62fa060d4d9d7bfecc3ac9ac96d2d98e *NAMESPACE
452461555abf65e60dff56eee8aba7c2 *NEWS
a7183b53b43da58807750af12afded11 *R/AlphaSimR.R
8659ce4816a3766a1b2cc51814efd74a *R/Class-HybridPop.R
66f1a40c49eafc5c795c9a5f21dff81b *R/Class-LociMap.R
1563964096418acf1306369dfb2e8936 *R/Class-Pop.R
48afae0d0732623018c39a4a81089d83 *R/Class-SimParam.R
4d1267216eaa0fcea2401ea63602dfa4 *R/GS.R
bca8cc8bde7380813945180d79c32bc2 *R/RcppExports.R
d8b651e8a11839d81b472237346ab1ba *R/crossing.R
cf01946c28b14657b2699c47cebe8c70 *R/founderPop.R
0575715e732efc779045a4825df307a5 *R/hybrids.R
b68a69990a1d9399a9e2cc154927a63b *R/mergePops.R
a1f5af67d261ee974c7c424deb225ba7 *R/misc.R
e0aa697944c313b4e00f3623e5b21c7d *R/phenotypes.R
cd80e7d3059f4cdef6c2bd48a6a2a3b1 *R/popSummary.R
8699e4f10093f0a3415ec31d88b176d0 *R/pullGeno.R
f32ae91a57644f7938c7341c541fb127 *R/selection.R
6867b1a85517896e1c8169138c3d8919 *R/writeRecords.R
4a519ea5a539fdd8b6701d57bc4e40f5 *README.md
684beb74fd8a66a90c4a7daf725361f8 *build/vignette.rds
c56d8dd12a1bd0477532f17dcfbff0c6 *cleanup
4fe28a8960b3f873d0b853c1127022d0 *configure
cbc30c3bdb80a0ba152033e4d689da20 *configure.ac
7d2cdf2acda9b9fa1fa09c8fe3c13142 *inst/doc/intro.R
d64370a166bdb7aad330521c0635a90c *inst/doc/intro.Rmd
db389970a3b50bd2c7b10aff9d8624ad *inst/doc/intro.html
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3c7a7578a962f050a42e8075761dc5ac *man/LociMap-class.Rd
6b2cb18244de4644a95aed067caed7c4 *man/MapPop-class.Rd
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2e24c05a2ad2cde2a864b3344f9e8054 *man/SimParam.Rd
b5967e097338a8f3f40ef2df81da6aa2 *man/SimParam_addSnpChip.Rd
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ee602aefb077514cdb186d17054377a0 *man/SimParam_removeTrait.Rd
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1dfed52d928988656e65c3e58c7b8e42 *man/SimParam_resetPed.Rd
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1c0d7703c5f5977272bb900f29987472 *man/SimParam_setCorE.Rd
95347352443f738b4bc47a284afe4cfc *man/SimParam_setGender.Rd
64997b2fb8cc6ff746f1e46a7f80d31e *man/SimParam_setRecRatio.Rd
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b5924e214146f939a200db54a78f4a9d *man/SimParam_setTrackRec.Rd
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0f9ff6a4a9171042ac61a44fa571f3a0 *man/SimParam_switchFemaleMap.Rd
35ee86d17c2aafa3552984cec1ad0411 *man/SimParam_switchFounderPop.Rd
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0a25bf0f3803e38a6ef56d4deab315dd *man/bv.Rd
54e4522cdbe7431dd4a046e280d4031d *man/calcGCA.Rd
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56f60780aaa59c624f082f6e8bf50f68 *man/ebv.Rd
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72e910b28b75fb4d3dd93d6cd8d6edc8 *man/editGenomeTopQtl.Rd
83cb5ca1ed5979fd9284a37260715704 *man/genParam.Rd
cb153ab178b58bc71973787300de641f *man/genicVarA.Rd
0a4a1baba2cd2393cf6ca9ba4b740260 *man/genicVarD.Rd
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9d67d3dea8a516cf3df611f463e38290 *man/gv.Rd
a615585731780a1f7e166bfa1ad4395d *man/hybridCross.Rd
93b33ad601e6c78eb4af800722a8a4f2 *man/makeCross.Rd
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620348188de1f23eb7fe0837c1072590 *man/makeDH.Rd
1197d8790fe2c2ce80a2ba90b3f368c5 *man/meanG.Rd
6a7988b3d377a691fa42fb932056156d *man/meanP.Rd
81ec60a40e10c6b6b4d2e5efc8587d6f *man/mergePops.Rd
8748a0734fa05837da542f4068995721 *man/nInd.Rd
7bbbe95866e6c4a96f433ce97b9fe266 *man/newMapPop.Rd
9a3954e7784adfd4c539f5bfbf5c1660 *man/newPop.Rd
3ac7726e85db9634e347ca70f1a9e026 *man/pedigreeCross.Rd
3a22bd04002fa459703faafc9e54c4c5 *man/pheno.Rd
456e31e7d92ef0cd2418028e322f301a *man/popVar.Rd
a57c2161d149b4cd1a8dd3e6844ac4ad *man/pullIbdHaplo.Rd
1272ce29f3c6f38190f92283d052ed00 *man/pullMultipleSnpGeno.Rd
ec75361d9ab55aefc41572d327e93d87 *man/pullMultipleSnpHaplo.Rd
ec08e6fd2e3740f59a4ce9316df0c0e2 *man/pullQtlGeno.Rd
9203be661fff36baaba8d29b4dd1d0b5 *man/pullQtlHaplo.Rd
1672dfe9879119f77557a15ecd917f8b *man/pullSegSiteGeno.Rd
1a24b4f17353ef2d9c46fb6590849f4d *man/pullSegSiteHaplo.Rd
bcd2a477be31a5e8e3489d5d6f77f883 *man/pullSnpGeno.Rd
601cb055d67cf8e8609ed4d190731b75 *man/pullSnpHaplo.Rd
96e627ee9e8322e72072aee771c8f32a *man/quickHaplo.Rd
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6ed3d3ac43b0a1bbec525b4b706ec69d *man/randCross2.Rd
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a5899e88075b2f0307577492fd7d8145 *man/runMacs.Rd
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a8168ec598ebe589f34bb74758a1d60f *man/selIndex.Rd
1e6a20c079f6f3a69afaa25c7be3c49a *man/selInt.Rd
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e7d8006e8c7ecc9a7a4bf81f62bea942 *man/selectFam.Rd
653bd5024cbed745cfe9939e2db25bf9 *man/selectInd.Rd
461ec69f7b1ca23892098366200aefc6 *man/selectOP.Rd
72bda7113e1c76d012e63f51f82643f1 *man/selectWithinFam.Rd
d05b538da32f480398333a852abf5288 *man/self.Rd
2328596b69ca89a3b532733ca5e95016 *man/setEBV.Rd
3ced0e8684550b59bd5263140abef7e5 *man/setPheno.Rd
3e96631f09cbe96f34f62d8cab001e1e *man/setPhenoGCA.Rd
8aa528591ee30195624b74ecd3544083 *man/smithHazel.Rd
99d6b36110cba53578d53419aa4a55ef *man/trackHaploPop.Rd
b73359161d900fba45407f0ca08f3d68 *man/usefulness.Rd
3de2c81c763d94741a26c964abfb24bc *man/varA.Rd
08d8292cc66f4f0ca147d31b9fdf074f *man/varD.Rd
1e15e29b4a0afb2bbb2b080f20cc34b2 *man/varG.Rd
ffa793a62b26b0b34f210bedd05d7f3c *man/varP.Rd
10196e444497f3876711b0862d14226b *man/writePlink.Rd
1974a164c4d9477a89b8eb40d1d9d24a *man/writeRecords.Rd
94e48607c98af9f0d7719832f1106f37 *src/GEBV.cpp
3b03fe73708eed0829a00fe72d5857f4 *src/MME.cpp
8538ea3f1a25c4ea2751911e6b2f15ac *src/Makevars.in
bee230df6ebea3196c0fe754585c486a *src/Makevars.win
b904d32f17d55de42476626cac6027cb *src/RcppExports.cpp
b61f0f447c96bb61936383f891a43799 *src/algorithm.cpp
54edda62673404d4e1619c64bf1984b9 *src/alphaSuite.cpp
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abf8ee1ff272e3d1724c15ef80dd552b *src/datastructures.cpp
00147893071ebe8d2b13a813649e72da *src/getGeno.cpp
8a55c25bcfb4e51b7845f31f16916c54 *src/getGeno.h
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ecf61e7e9523ec31e5402fc12686cc37 *src/getHybridGv.cpp
ae107a96532e303483bcbca06b2b5a67 *src/init.c
8b8701ec2324aeeed1bc3f19596bb481 *src/meiosis.cpp
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e6422fe7abd7b30c55ca07dbce1a574d *src/optimize.h
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85c5466d7e98701f4a2b98762fefeb3b *src/plink.cpp
1ac2ade8317a6480ef58cc4322f0c7ce *src/simulator.cpp
ab2471403bb60203f733aab07cda83ef *src/simulator.h
b0aff1a7aab8754f899b0b6ae40097c8 *src/tuneTraits.cpp
4f73537cef0969345caec0e220f40246 *tests/testthat.R
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71f76508168b808b48f3635430e17e61 *tests/testthat/test-crossing.R
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5e82c3e4ab2c1d9351172818d5bf1364 *tests/testthat/test-hybrids.R
00b8896df01ad62151adf7ccb8ddfc7e *tests/testthat/test-ibdRecHaplo.R
5012f419d470d6b08ebedda893cf41f4 *tests/testthat/test-statistics.R
99c25951014e3aaa5b43f90d15273327 *vignettes/bibliography.bib
d64370a166bdb7aad330521c0635a90c *vignettes/intro.Rmd
