d75fb8565348a45a352c1dc61e054be1 *DESCRIPTION
e62637ea8a114355b985fd86c9ffbd6e *LICENSE
1e0fdd0821e0d4bf4a8649410dbfb7b7 *LICENSE.note
cbe9b82656ee49389e7ca54f8618c12d *NAMESPACE
892dbc470c368530706008bb68f2be76 *R/RcppExports.R
9476cfa99c463cd1dc72ae8d05f1940a *R/cla_secsse_eval.R
874a1b95cc455b7c8ddae4c7cb3e6a0f *R/cla_secsse_loglik.R
06f2059bc078040bdbd8843484e79918 *R/cla_secsse_ml.R
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0dcf219745c61c64042c3c6d3539e4d4 *R/data.R
c7a80e063047b2bc5dde603a29966b36 *R/event_times.R
19f41938afd7ec26a467f9ffe1628556 *R/plot_state_exact.R
fed108cde27538b6f1e0cafbaa5afd95 *R/plot_state_exact_cla.R
1b54137d4ae82b40a266122de6d1201b *R/secsse-package.R
ba1a78884da54ac334d0665b6c225a7c *R/secsse_loglik.R
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3f4b6b7e04b87ed9b8e181120b73bfe9 *R/secsse_ml.R
6d0f458bb7676de8659177eee970bb67 *R/secsse_ml_func_def_pars.R
97cf2441e1f82a3c291f150c03c5e7f0 *R/secsse_sim.R
fdd30770bab0a45aea37e9f95fa87bac *R/secsse_utils.R
cb4924f3573383fca290a0a8e2ca5294 *build/partial.rdb
0c2195b31dbf801bbdfae331798cfca8 *build/vignette.rds
928bc5af5e3b18485abc399d05974ddf *data/example_phy_GeoSSE.RData
a0af3149ac497eba803e09bf8d3e87ca *data/phylo_Vign.RData
4ddf644968a992ddbcc1f156385c8633 *data/traitinfo.RData
6ff9c967e9e2733a927d54d7b1b5659c *inst/COPYRIGHTS
714fb30717750fdd2c051300c39ec5f8 *inst/doc/Using_secsse.R
c3a6dbf2ac3fbdf9258986aabe42bb73 *inst/doc/Using_secsse.Rmd
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81b294ebb697c2bb25bd0c1b440051b6 *man/cla_id_paramPos.Rd
229342065e10f15b2723956e201aee45 *man/cla_secsse_eval.Rd
7531455cef5e88c87d5c2a9bc452d956 *man/cla_secsse_loglik.Rd
a406665f0688b783de3c734414122518 *man/cla_secsse_ml.Rd
9dbd112061060f7ae919d4869a912249 *man/cla_secsse_ml_func_def_pars.Rd
50cb7ad03c8ab758d2cecff1f452c438 *man/event_times.Rd
b581e3fa14d601ac289674c8be894249 *man/example_phy_GeoSSE.Rd
45ed5a5c2e568b49e4e9de4f133c88eb *man/id_paramPos.Rd
18d61bd25233673dc72b65b2a8808236 *man/phylo_Vign.Rd
dde9012079ff843d05faf158cd222c16 *man/plot_state_exact.Rd
2496be5b66c59394be06d1e3bdf15855 *man/plot_state_exact_cla.Rd
8ed359e7fb7e36833f495aaf2b2cd943 *man/prepare_full_lambdas.Rd
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7e7992363f41d85a45fa10fa87d4565c *man/secsse_ml_func_def_pars.Rd
233e17bd22487d3efcf12de3e34c6a93 *man/secsse_sim.Rd
0f580ea04e8a3c22e6d1edf09a597c62 *man/sortingtraits.Rd
1480129d8ff39f1c148fc9b7ef323e14 *man/traitinfo.Rd
665033d0ef12525cb6de24862d3c8202 *src/Makevars
66fac2b02015d922d6e751e3a8a57074 *src/Makevars.win
7e71e61735b299dcc6d340ded29873b7 *src/RcppExports.cpp
f0c6a1f254dd8590675480c772a2d00b *src/cla_loglik.cpp
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76242e786c779cebb500e56c039a4beb *src/cla_secsse_store.cpp
c87d348b3b075a7a56ea4fcbaad77a70 *src/config.h
1c76e48aa687f34a0e707cc130057899 *src/odeint.h
e0888dd15c003f6ec6c7e81219ac1419 *src/secsse_loglik.cpp
a7214e080c64cd50c62a5fb52d5456a4 *src/secsse_loglik_store.cpp
1821d514e9c5df6356b8375a918d7422 *src/secsse_loglik_threaded.cpp
766f2583727b98187aa4c6aca6b68105 *src/secsse_sim.cpp
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f0894c31928eb5883b94f677377971f8 *src/threaded_ll.h
b0b86404fb49427e24821b99695148b3 *src/util.cpp
51c878379a340a43d28426b41eed0b86 *src/util.h
f9d50d3f58b3214022cc38c13651e153 *tests/testthat.R
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c3a6dbf2ac3fbdf9258986aabe42bb73 *vignettes/Using_secsse.Rmd
f4bc3ec029b840a3ce25f1f4b00f0175 *vignettes/output.RDS
f0bddfae5971556f837225b2b82b971a *vignettes/plotting_states.Rmd
