518b23207bc1f39fb5ef43d198a07cee *DESCRIPTION
cba81ccff2745841f32d974deb4d0c36 *NAMESPACE
bfe9bd70c7146e1a0eb2ac8ac556a5a1 *R/GP_isochronous.R
9c00fdf8e12d1e653799e5fd10b964a5 *R/INLA_tools.R
677f9cc63e90e9ccf31faf4f9c3a8060 *R/Newick_Files.R
14477473278f2a04816ff2227d041723 *R/Phyloinfer.R
618097ae38b510eaf56054fa681786d2 *R/Tajima.R
cb7c5c42f37061e4378126902ddf8da7 *R/calculate.R
2df7c49d1f953253ab48e767f47f3aa9 *R/coal_lik.R
249d51028a09943d2240ce9386dd9039 *R/coal_lik_BSMC.R
00792ab56e1652f33bef4f22ae56d2dd *R/coalsieve.R
dd75e8efe79a085e32b0b36c0a07f6aa *R/datasets.R
1e285fdf250e6e66673752bb514cc652 *R/gp_nieps.R
6683e04c693387027f44ea980e295167 *R/hist2heat.R
ceb53801a25430d9b94305f2409ebcbf *R/model_check.R
cc981d3615bbf4d59da7fbe44b583afb *R/old_functions.R
ffec83929a8dea152b7b0f2f1acc6ec4 *R/performance_measures.R
7e0695539f97b5af024ab71743316e05 *R/phylodyn.R
f04ace68aaf7c85ea29738c091ae5dc7 *R/plotting_tools.R
ef77b3be0bdf4c58ea5a85da42f00a33 *R/read_newick.R
aa111c00850fcce55ea1515117f74d09 *R/simple_models.R
2dab0e826c0aed153321d8f1b2cff1e6 *R/statgentools.R
e855ac48a4b23719aba5831dac630c80 *R/trajectories.R
9ee6ce482ef4cabcd4bd69cc6d160b2f *R/wrappers.R
e281dfa9d58f6e2d4743009cf15b4232 *README.md
5cd3a51c2dc47aefa98a065eceef33a4 *build/vignette.rds
81bd49351dd5a3bb781eea5dbb9bf956 *data/Bottle_20c.rda
403ba3f0457f8e1b43327128c22d8ae5 *data/NY_flu.rda
c6962b2f665fbe12f1b0bbde25d1c4c0 *data/regional_flu.rda
b13a3a711d28294612ea840b55944873 *inst/doc/LocalGenealogies.R
58130ade63fb92eb9b97fba96a8c34e8 *inst/doc/LocalGenealogies.Rmd
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3e8ce7a235d4de98fc302c4ca0025cfe *inst/doc/LongPhyloinfer.R
4c08b6812d6c4d4dc42d0cacc56a914e *inst/doc/LongPhyloinfer.Rmd
67b312feba7ff596bdc314d8303c9f6f *inst/doc/LongPhyloinfer.html
83772a9a3211eb4885260234b590fd00 *inst/doc/NewYorkInfluenza.R
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1d07cbaa888c40758b383c056218a7a6 *inst/doc/RegionalSeasonality.R
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3f1c994f60186def0bea983f27e6121c *inst/doc/RegionalSeasonality.html
065a6f76c4de40f7fd43fae17615d4b2 *inst/doc/SimpleBNPR.R
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9e3c6a8a78c75759c307e9710804bba7 *inst/doc/SimplePhyloinfer.R
3d4c2a80ca9367aa2bdb5f6aab7579ef *inst/doc/SimplePhyloinfer.Rmd
30af039e4bea9bf082ec71e185e6ba43 *inst/doc/SimplePhyloinfer.html
1f4c59dd9d16d5f41dc41fdaedecf244 *inst/doc/Simulation.R
e76e023916cd04a31b17ac2eb4fa1dc1 *inst/doc/Simulation.Rmd
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92732247bc3563c0580724619cf1959a *man/BNPR.Rd
3efef6f350778d34c0e546e5b62ac406 *man/Bottle_20c.Rd
c1bb270668badd5e42b23912075b32f1 *man/NY_flu.Rd
55d695a179bf140d1e6801fd228540ad *man/boombust_traj.Rd
eccfc401bc11756dff1060a14afe7cd3 *man/bottleneck_traj.Rd
4a12d684f8b8101613e2ca9911eb2641 *man/coalsim.Rd
3a5cfbf28e5e285560e01d2ad9d38e51 *man/create_F.Rd
538579204ccfc7e4fc08932bc5d00c20 *man/cyclic_traj.Rd
d06972225872f221438f93c6c4061bff *man/exp_traj.Rd
92c6595d24433826acb2bb8b8249c035 *man/find_info2.Rd
6206734762cfca3ade744fc3189d7cf5 *man/generate_newick.Rd
28e672c3fd90f7c6f85a7709f75a5c98 *man/hist2heat.Rd
e116233efb6d66231a405c5254ec81d6 *man/inla.models.Rd
c7b959888056cae0bdfde5a630214d50 *man/logistic_traj.Rd
c6bf6401dd559a195ca7462edb100dae *man/mcmc_sampling.Rd
70f88b7d314e9b90ba491ce618f89167 *man/mesa_traj.Rd
34745e1f9be89a3438999ce156bdbdd7 *man/ml_exp_coal.Rd
bc1d480da5da8f0da005c7396689ebbc *man/phylodyn-package.Rd
0cd25f7b76714bddaf17d7ad1aeddc54 *man/plot_BNPR.Rd
bd7d664a126a4bcec1b818cd8c59be28 *man/plot_mrw.Rd
fe5cdcdf606dcffbb2af55a1c0f34781 *man/plot_res.Rd
1779b43528658965d1101a438e11edf1 *man/plot_seasonality.Rd
065427bdd5461d93135201a754ce88bb *man/posterior_coal_check.Rd
1b80d9a2b13b2733f6847c252810d042 *man/posterior_samp_check.Rd
31ca449348ba18ea692a3d64b640a3ee *man/pref_sample.Rd
a3f3a02e73a0467703718855f746197f *man/read_times.Rd
a7714474aa485597848e267e6669a57a *man/regional_flu.Rd
829cbf9cb4440707d85a53b1574ed59c *man/sloped_traj.Rd
f5f6d9796f6e3a93e7f48a391a260797 *man/smcp_sampling.Rd
3a31c3871482c38755033dfc516a6b59 *man/steep_cyc_traj.Rd
6dd994d7825e33ecdeef727c5f3b2574 *man/summarize_phylo.Rd
d585143c03a59648a7e33f116a1bf6c6 *man/traj_beta.Rd
53b29fae31f078f48199496b9d41a76d *man/unif_traj.Rd
fa0c8166bd751d2a0424d0eb38536491 *tests/testthat.R
8e8aa112547d36c45e0faf57aa8f9d78 *tests/testthat/test_anything.R
58130ade63fb92eb9b97fba96a8c34e8 *vignettes/LocalGenealogies.Rmd
4c08b6812d6c4d4dc42d0cacc56a914e *vignettes/LongPhyloinfer.Rmd
0eda57e502f58024516e7583a38109d9 *vignettes/NewYorkInfluenza.Rmd
9c7ca970787f3952d6f3935e76f20134 *vignettes/RegionalInfluenza.Rmd
f5397fc09b73cc8ff743487bf0ed1f24 *vignettes/RegionalSeasonality.Rmd
1d18d5773f75689480072b37cfd2273f *vignettes/SimpleBNPR.Rmd
3d4c2a80ca9367aa2bdb5f6aab7579ef *vignettes/SimplePhyloinfer.Rmd
e76e023916cd04a31b17ac2eb4fa1dc1 *vignettes/Simulation.Rmd
