4d6a8036cb94d3ba20c4b35c7a13c16d *DESCRIPTION
8096db63177edf0d2d8ce84d6fd40587 *NAMESPACE
0a99574681eecbf382187097d929dfc6 *R/filterMAF.R
c2684af172d857582bcd001f09e7544d *R/generateBurdenPlot.R
03d9f171bb01838bab237c44334383d0 *R/generateMutationTypePlot.R
fc837cbe997a1a7a584e8653f09f92d3 *R/generateOncoPlot.R
9100299cc7197aaf93319be64f6bf794 *R/generateOverlapPlot.R
4d06272a9b3442d76f87bc94b4cf34d3 *R/generateSingleRibbonPlot.R
5746df318f0361fa0f3c175009f13bed *R/getMAFDashboard.R
ae4230b9eee8a4c7ffb098c7554d9935 *R/getMAFDataTCGA.R
4b836b45e8cc26dfcd47e939d15a6cad *R/helperFunctions.R
98b0896b3fc47cf1cab7cf4a31413f04 *README.md
b61d5e5cced91c05a8e3548a6a44021e *build/vignette.rds
28213d4e147763507c071a8487d48d9f *inst/doc/Advanced_Example.R
7b972b4eb51fd56a1347a5169eece325 *inst/doc/Advanced_Example.Rmd
23ee594c9119cb730ea8e404473c4a8a *inst/doc/Advanced_Example.html
28213d4e147763507c071a8487d48d9f *inst/doc/Customizing.R
a9c382049424d376e8d1fc7379f8e9ef *inst/doc/Customizing.Rmd
72b65ab1421496152c57f0491292f514 *inst/doc/Customizing.html
3fba48c262849e27786b1d1efbdb2308 *inst/doc/MAFDash.R
802cd5553610dab52ca70a76674e5900 *inst/doc/MAFDash.Rmd
8096f4b67e5a261c33b79809c49d638c *inst/doc/MAFDash.html
28213d4e147763507c071a8487d48d9f *inst/doc/Quick_Start.R
f091737a10bf8f3704f10af2f2896543 *inst/doc/Quick_Start.Rmd
8570904bcbe25bc702462c03e35740b4 *inst/doc/Quick_Start.html
35ee1a5afab3caf19ef22ce722232f85 *inst/extdata/MAFDash.Rmd
b8471a26715139e0eae3fc4b68b46e41 *inst/extdata/burden.Rmd
8f460e352c62351028bcd336ac7260b4 *inst/extdata/cooccurence.Rmd
2334e7cf6c372ded7c29bb62e9740428 *inst/extdata/custom_image.Rmd
91e6bc920658bd95b130ed6b25c0da2f *inst/extdata/heatmap.Rmd
990fae4905c0de3fa91abe61e00b03c8 *inst/extdata/oncoplot.Rmd
4e5b42f7ed9c10e7f5d628fff843e3f4 *inst/extdata/summary_plot.Rmd
18217d1fb32c4a99e0ed547574dca02e *inst/extdata/summary_table.Rmd
9b1fcf43438d277218c0a8d93044a844 *inst/extdata/test.bed
b8945b04447ced217d49994bc5fe186e *inst/extdata/test.clinical.txt
6df3d16e70c3a34504f2f924ca2ed8b2 *inst/extdata/test.mutect2.maf.gz
57b0637c8cfa36c946ee956c864934df *inst/extdata/variant_table.Rmd
0f32d7720272f24306ccd07774832297 *man/compute_exome_coverage.Rd
a850135106da1e34655620f3c5fe3472 *man/createOncoMatrix.Rd
6a99a2104b99b97d75a0ba198d3d4b38 *man/detectMAFGenome.Rd
5ffe7431ac3fa6b8f3b75ee1d02ee66b *man/filterMAF.Rd
9c6172fe0aebe955f95c1371400de824 *man/geneSelectParser.Rd
b00a20e692184188845ea44b56435a7b *man/generateBurdenPlot.Rd
f50ec74da725ac643b9320f4dc7a68fc *man/generateMutationTypePlot.Rd
8bcf0df67f03c90192bcb2abcae6b129 *man/generateOncoPlot.Rd
439e1f201b5dc2cfa2e87437f129328f *man/generateOverlapPlot.Rd
4a292dac4fe345fcbb84984b35634290 *man/generateRibbonPlot.Rd
eda504d5d549dfc41055970e7c9ae7a3 *man/generateVariantTable.Rd
56fdd438d04da48140784fe0695d34ac *man/getMAFDashboard.Rd
7278678c29e04439e1f0f2de8a1e0e65 *man/getMAFdataTCGA.Rd
2418d0a96a2d2d0a29fb6c5118dc15ca *man/getTCGAClinicalAnnotation.Rd
8e599b3ab223646a4a850d1e08f241c7 *man/getTCGAClinicalColors.Rd
7b972b4eb51fd56a1347a5169eece325 *vignettes/Advanced_Example.Rmd
a9c382049424d376e8d1fc7379f8e9ef *vignettes/Customizing.Rmd
802cd5553610dab52ca70a76674e5900 *vignettes/MAFDash.Rmd
f091737a10bf8f3704f10af2f2896543 *vignettes/Quick_Start.Rmd
