d209a39a947120b2e2b3213ad5621662 *DESCRIPTION
84dcc94da3adb52b53ae4fa38fe49e5d *LICENSE
de72c1b5826083f5d1b7be38288c74c4 *NAMESPACE
cd2a22af221e84c73ef7076ee3eaf572 *R/Hmsc.R
ab4d4e079ee4460a7073953fc8ea2daa *R/HmscRandomLevel.R
419dd521d74d63d9ef10112bfe036891 *R/alignPosterior.R
18ba3cdce453a331165eefa0b6cd8ff0 *R/biPlot.R
1e20f4acd1ec94db59d4634e4557aeee *R/combineParameters.R
a0d8d1011598b2644c1f2ece0fde8468 *R/computeAssociations.R
b13ddc81a22a7252b8bedb77cde45cd5 *R/computeDataParameters.R
8f093de01158c381361467f229ff243c *R/computeInitialParameters.R
28d5e59da9035c24ae6676e4e2fa8b71 *R/computePredictedValues.R
1fa3935bf92c960a360d550e7e74a439 *R/computeVariancePartitioning.R
c30f1c357da1a71a1c551eeb9145b515 *R/computeWAIC.R
82908a8982cb623ecc48154c1903844d *R/constructGradient.R
14d5c950e10282c47789f5e912a10ead *R/constructKnots.R
5ea8e681ca06bc5da3c1aacd65f982c0 *R/convertToCodaObject.r
d166a9836a73b1d6fa560f271707bc09 *R/createPartition.R
ab8c3df16e55097b67d9e0138195050b *R/data.R
08d4b722c687fbbbebbc8f74e3d4eb07 *R/evaluateModelFit.R
c4485f6af4b4b47b00e52d8fb3eeaa4c *R/getPostEstimate.R
50eee16d54421409549b771f4d9e5a3b *R/plotBeta.R
71e5629c74253ce9b9e25aee4791fe4c *R/plotGamma.R
cdfba6f162264afc4c2370b7f4a25444 *R/plotGradient.R
2d036d2213cbd64ab37230a51d0053d4 *R/plotVariancePartitioning.R
878f9899fb8d58c3bba1bc427d1f62c5 *R/poolMcmcChains.R
306a1dbc19a6e46a820d560752982eb2 *R/predict.R
d7fa4aebb2f7962f34ec90f2f6e978d3 *R/predictLatentFactor.R
73611afb46b2302a04787b326b2ea45b *R/prepareGradient.R
96b216c5ef711e84e3b9538e3079893b *R/print.Hmsc.R
27dc78595358da73ef1e55c346340fcd *R/print.HmscRandomLevel.R
3b6ae0f7da2ac15cde9b1f40acc1e36b *R/sampleMcmc.R
0a5ff33fffac2a391e53576d6c04bafb *R/samplePrior.R
9eaa5cbe483f09aac39f2aa3b1ccb29a *R/setPriors.Hmsc.R
68237ee513496e8b0b544b06bc7643db *R/setPriors.HmscRandomLevel.R
f07c3d4f152cf07048a52b4bdd42d641 *R/setPriors.R
45ff8085a9d078b8318aacf1bc03d6c2 *R/updateAlpha.R
eb6f00f3d1aee10f3adafdf80bbd8dae *R/updateBetaLambda.R
a432e8801eb900fb92a1562b24164b52 *R/updateBetaSel.R
3306bc48a1d0ea7b0aa199462fc68448 *R/updateEta.R
1fb0422fa16d28c4c9ab9fb308b6ee77 *R/updateGamma2.R
d76f5f95080faf185dc3209f00d027a4 *R/updateGammaEta.R
a0823decbdfb4bc03064a56a920662a0 *R/updateGammaV.R
4eeca62c3a2ed87bee5765a22f9f5139 *R/updateInvSigma.R
babc0d1c9fcf306326cac51a5ffc0778 *R/updateLambdaPriors.R
b68f208c814595eba1bbbfceec0bc12a *R/updateNf.R
d389cdbbea14f97d9fb9d7619864b163 *R/updateRho.R
92587fa71f3760ad37909b4864727128 *R/updateZ.R
b3a3dc5d4dc0cfac7763bc77fe32141e *R/updatewRRR.R
aeec5d4ccb44f9b04193c1c39609f3c4 *R/updatewRRRPriors.R
85eceb635b95cdc70433a69aef9b680e *README.md
23777beb9661c144cf15a17717930804 *build/vignette.rds
c9f7721c4221fe169ce916ef30c55355 *data/TD.rda
fbcb6e90ddc940d2044f7a5f213b9c88 *inst/NEWS.md
45a82df56cca5b60efdcdce12caa0e53 *inst/README.md
7951d70269db570509353eb857a29045 *inst/doc/vignette_1_univariate.pdf
6fb15f62f62e2601b2da0e7869eb49c4 *inst/doc/vignette_1_univariate.pdf.asis
388c4d606585c82d928c3717a8b649eb *inst/doc/vignette_2_multivariate_low.pdf
ccfb64fa2ba729cf73fb7f0e5ebec8a9 *inst/doc/vignette_2_multivariate_low.pdf.asis
3d101b780384bef2a7e34434cdf3f942 *inst/doc/vignette_3_multivariate_high.pdf
1cdc01283b89407b8719f73b6c6fd821 *inst/doc/vignette_3_multivariate_high.pdf.asis
94fa827c9897848cae973049c2b9b862 *inst/doc/vignette_4_spatial.pdf
788ffa1fbcbd02f0959a080069f0364d *inst/doc/vignette_4_spatial.pdf.asis
f42567288d6d182e5a65e3f57217d5f7 *inst/doc/vignette_5_performance.pdf
e194e2d51a97bb1ea7343f7823df10ff *inst/doc/vignette_5_performance.pdf.asis
0626e36e67abdd6d44df3f16af02f8f5 *man/Hmsc-package.Rd
f7e3e61f961403adabd450a332bf82ed *man/Hmsc.Rd
f63cb4e837253bc3d711ea6f23675077 *man/HmscRandomLevel.Rd
5ee485920b1fdbaf5385a434016d1505 *man/TD.Rd
6b8a4d1eb6900c23a685890a609c6916 *man/alignPosterior.Rd
b93c09bb0b35c5981d63597be3bf7fe5 *man/biPlot.Rd
bc477871a00dda9ad26d7173cfa94949 *man/computeAssociations.Rd
ef44984f1cc6eed423287587b5cf7bf7 *man/computeDataParameters.Rd
06caf3f5413855c8cb809ebb59ddd8e8 *man/computeInitialParameters.Rd
5cedba4cbadca5fc8609a98acdd62cd4 *man/computePredictedValues.Rd
f1bdcec3b2c52dc93b06951ec9128005 *man/computeVariancePartitioning.Rd
6ac05285e22dc1c3d68f36e2d5f91150 *man/computeWAIC.Rd
aba3567fe6f6aec8bf13c07812fe4369 *man/constructGradient.Rd
16adcece7755f555b404e318a0aad30e *man/constructKnots.Rd
73c32003ddf670207bcdde0bc3bb69a4 *man/convertToCodaObject.Rd
099282c8f1be3fa8f3f7b3d116361c57 *man/createPartition.Rd
b3aa13dbf8b528058baa85267d26ea70 *man/evaluateModelFit.Rd
489e080591f52449b10fa5f44ab3bc34 *man/getPostEstimate.Rd
a7e404473848d98da80b77e5a40ab0f1 *man/plotBeta.Rd
206d4554d26fdca281d9e95bc5a2e19d *man/plotGamma.Rd
457f47997dfe0791a0d7d1d86f9ac6fc *man/plotGradient.Rd
8291187e5e1c464f19e5de5ae527dfee *man/plotVariancePartitioning.Rd
a57c50277d45848121bc9f24a0417ead *man/poolMcmcChains.Rd
405aefdab4f9cf2312f8607fc8f34372 *man/predict.Hmsc.Rd
b233b1b33ed57fdf2713d76fccad70db *man/predictLatentFactor.Rd
46b3ec08e986b1e09753425ce7a07f61 *man/prepareGradient.Rd
784651134f985e532de81c5534328d56 *man/sampleMcmc.Rd
518b7aecf3f720cd8a22e50bf6a67ab5 *man/samplePrior.Rd
686564634b52ac43ea7a6e02082f3f26 *man/setPriors.Hmsc.Rd
fd7e8bd0a767b9a48763b1cb185b891a *man/setPriors.HmscRandomLevel.Rd
521784c9ff4ed56cf0c0cea384aa62ef *man/setPriors.Rd
56a20cf0e69e8b2439ccef1d06a1e39d *tests/Examples/Hmsc-Ex.Rout.save
36e9abe5dd74239636c3358fbb7d3514 *tests/testthat.R
33b98c29d0c00df59e734fa071990469 *tests/testthat/test-WAIC.R
06086f6bed3d7c8e26ef47b800776c3c *tests/testthat/test-initialParameters.R
8bce6e27a75c6f8f933f023c5317ecc9 *tests/testthat/test-sampling.R
073e72d4a63029e02b0583bd4d6264d3 *tests/testthat/test-setHmsc.R
48a40717e08479e26bc21456c9dbf184 *tests/testthat/test-setPriors.R
528b6e76ea7bf22963e4977783393992 *tests/testthat/test-setRL.R
9ac7df3798d3432b9f02025671e8f81f *vignettes/load_libraries.R
2a9019cca4584f83ea22e31cd5516b7d *vignettes/makedata.R
4de384b41b69f6fe679e8c5983fa4bf1 *vignettes/vignette_1_univariate.Rmd
6fb15f62f62e2601b2da0e7869eb49c4 *vignettes/vignette_1_univariate.pdf.asis
53e888e9054b750a74f9cda909260eb3 *vignettes/vignette_2_multivariate_low.Rmd
ccfb64fa2ba729cf73fb7f0e5ebec8a9 *vignettes/vignette_2_multivariate_low.pdf.asis
1e05768f766a2d920edb03581ae6afce *vignettes/vignette_3_multivariate_high.Rmd
1cdc01283b89407b8719f73b6c6fd821 *vignettes/vignette_3_multivariate_high.pdf.asis
0b5ea37bb993d66c9c05f899235269a5 *vignettes/vignette_4_spatial.Rmd
788ffa1fbcbd02f0959a080069f0364d *vignettes/vignette_4_spatial.pdf.asis
a59e2a8a4c99de7f172c7e9ae47b178a *vignettes/vignette_5_performance.Rmd
e194e2d51a97bb1ea7343f7823df10ff *vignettes/vignette_5_performance.pdf.asis
