1e14106b957a6975e2b438506c170822 *DESCRIPTION
f643e6d6541fd81cef4166a1970f93f7 *NAMESPACE
ea972cef59e5a1b25ec9dbd34b78818a *R/DEploidR.R
d542c5667378ada940dc02c70062956a *R/RcppExports.R
ca35c56c0c379f292f8fab68b3a19f61 *R/dEploid.R
958f510a754711eee90a6d9191e0c0cc *README.md
511342e040b64d8b5fe29c78b0bec323 *build/vignette.rds
01c90976b229646ca9b46399709688e3 *inst/doc/dEploid-Arguments.R
4c6f85b3125573a004b0239c9f93c584 *inst/doc/dEploid-Arguments.Rmd
6c8f5055c88e0dfca4a9cb2c101632cd *inst/doc/dEploid-Arguments.html
2cad08193815864d8a26f8ac768ef199 *inst/extdata/PG0390-C.test.alt
07eccfaeb952de9e0460bcc12d457b22 *inst/extdata/PG0390-C.test.ref
cdc601c1d8d4eec2bc80512eb8ee6b6b *inst/extdata/PG0390-C.test.vcf.gz
d5122a085c423ba8bdeff856b6a6f768 *inst/extdata/labStrains.test.PLAF.txt
a865c12e4c27f049106f134b695a0b82 *inst/extdata/labStrains.test.exclude.txt
58b29caf285f90a0900f2b04443ec465 *inst/extdata/labStrains.test.panel.txt
e6c5709ab766a591f9dd389abd448c23 *man/computeObsWSAF.Rd
b783355f1b37775d87a274458f56cdbb *man/dEploid.Rd
807e385b1ba36c42fb5cbc18d90f0b51 *man/extractCoverageFromTxt.Rd
3c3609c7307fbe810161ed70670a5466 *man/extractCoverageFromVcf.Rd
7a3de475e2658423804fd93ade8fdd0d *man/extractPLAF.Rd
56a9a867e99b7339a9a09acb3d66cf0a *man/haplotypePainter.Rd
1889e8f463e1d0eaf44f32269681526d *man/histWSAF.Rd
82301c5903d666cedb9d5724ff0b99ae *man/plotAltVsRef.Rd
1d437716d00c55a2bedaf1cdc6daceb0 *man/plotObsExpWSAF.Rd
7ac118ef617a938addf0ef56791146be *man/plotProportions.Rd
5ea7673f44a4cf8945e12103d521fa89 *man/plotWSAFvsPLAF.Rd
c3adb6d6823db1b19840143fa58ba349 *src/DEploid/codeCogs/asympt_expn.h
9c4cc52f7742819084a453fef38e0288 *src/DEploid/codeCogs/errorfn.h
09168cd629e28c9591a8b7a276acc1e4 *src/DEploid/codeCogs/errorfnc.h
23d6452106b5561002ce0c10f3804ef4 *src/DEploid/codeCogs/errorfnc_exp.h
dd8dd57dee7f3c8d2b45dbf03e8c5163 *src/DEploid/codeCogs/expx2.h
2f905303a07a8e69bbd46a3eedbf34eb *src/DEploid/codeCogs/gamma.h
5a369c47236d061678c4e2ea954a0866 *src/DEploid/codeCogs/ln_add1.h
820a1ecd84ab39df9204e9b1e59b8873 *src/DEploid/codeCogs/log_gamma.h
830e4770c3ef6b5afbd962bc89786b34 *src/DEploid/codeCogs/logbeta.h
4d3024ecd41e77f173a95d7ff2bc55ee *src/DEploid/codeCogs/loggammafrac.h
89734db2e095786f0fd83d721b0ee208 *src/DEploid/codeCogs/loggammasum.h
ae7e51c1268072067ffb113c577f5bb6 *src/DEploid/codeCogs/machine_epsilon.h
ccec2bc4b1d1436416711e52b16ef3e0 *src/DEploid/codeCogs/mersenne.hpp
2f8d156a5ffa6d1f3bb302af68b59090 *src/DEploid/codeCogs/poly_eval.h
785e0971c65e88f066c599e4ba8f9324 *src/DEploid/codeCogs/randomSample.hpp
94c33b48dee38eb7bdc87638e718e09e *src/DEploid/codeCogs/stirling.h
a3585d8d0b267c7076cc835be837bf5f *src/DEploid/codeCogs/xsub_ln_add1.h
190f59db22ceebe71824ba699096550e *src/DEploid/dEploid.cpp
62c6f8dc7d1d6a25816b2e67e6672363 *src/DEploid/dEploidIO.cpp
533ae534b972687ea0c2dc6050d3bd40 *src/DEploid/dEploidIO.hpp
c3db9bab3d4aed6482946fe119956fe1 *src/DEploid/debug/mcmcDebug.cpp
9f0f4f93ca4114daaeda462ebd671c23 *src/DEploid/debug/vcfReaderDebug.cpp
6abafdcdd259ddf357bd87061384c422 *src/DEploid/exceptions.hpp
d1509c05ecd07ea6444c34add6cb40a9 *src/DEploid/export/dEploidIOExport.cpp
1597a3c9c4ba78dbdc46f69f7cd19e64 *src/DEploid/export/dEploidIOExportPosteriorProb.cpp
5d8d873e67678af9b2c4cd95f10c6493 *src/DEploid/global.h
7fbc338309ac38fefcd64b04bb903e34 *src/DEploid/gzstream/COPYING.LIB
d632447d46c9b1d6ab0103de7a665034 *src/DEploid/gzstream/README
e57e01d94637dbc81291eb52d7b3670c *src/DEploid/gzstream/gzstream.cpp
99d59b3af2c3974f943e118556645888 *src/DEploid/gzstream/gzstream.h
caa5ea78d04f32a480fa6d4008817cec *src/DEploid/gzstream/index.html
78e2cca98f5d11a43af84eccdd9fb96e *src/DEploid/gzstream/logo.gif
72767782fc756a7855f92361e949b499 *src/DEploid/gzstream/test_gunzip.C
ade409024dc2511702be4b25cec98304 *src/DEploid/gzstream/test_gzip.C
667c569a5d455053fccbd853ba195eab *src/DEploid/gzstream/version
30483ed354175e541f99a051afba55cd *src/DEploid/mcmc.cpp
1e5b763e4a77dfea3236d99f7a137b82 *src/DEploid/mcmc.hpp
24f915a039f983555dec8c40c8d372cc *src/DEploid/panel.cpp
7380500da399ec4db8462413db61c4de *src/DEploid/panel.hpp
124a48489755400ba0f5bf2febd74d0b *src/DEploid/random/fastfunc.cpp
e5d49c9a9395715b8698fbe6c0c31ebf *src/DEploid/random/fastfunc.hpp
eab70c06d07d71824f14f38ff0dbfb73 *src/DEploid/random/mersenne_twister.cpp
2546874b3cb6a99cdb852748e8a04d38 *src/DEploid/random/mersenne_twister.hpp
c0f68155bb097f644bb8e8b297f499b7 *src/DEploid/random/random_generator.cpp
63a824d628eff84033ab7e3d1e5e27aa *src/DEploid/random/random_generator.hpp
50561b0c89da40b4d4bf6bb1254f3dff *src/DEploid/txtReader.cpp
5c5fa5360dd019aca51c9a2892018650 *src/DEploid/txtReader.hpp
d2989d04a60a4ae4d3361149cd97ae2d *src/DEploid/updateHap.cpp
6ad4b5e207a3e8628b501e69d3fa8813 *src/DEploid/updateHap.hpp
4eb385c37a707e9c7a8447e88d6cc743 *src/DEploid/utility.cpp
fb31e7d3ce0a29ed9e44624ded1e5918 *src/DEploid/utility.hpp
d78f4650b9e13090cf7acf9b24851e0d *src/DEploid/variantIndex.cpp
5befd8a0bcc2b5fac322c9d8bdd2320e *src/DEploid/variantIndex.hpp
5f6c3bb7530a9783575ea99e331ea3e4 *src/DEploid/vcfReader.cpp
4a139bad79b76e7e53193497ebe848ae *src/DEploid/vcfReader.hpp
0ede14f6c763cbc6120f9b6957a5f828 *src/Makevars
0ede14f6c763cbc6120f9b6957a5f828 *src/Makevars.win
ab87ea5af0ce76fb6ac3c99d2c0f2467 *src/RcppExports.cpp
056d7eeeb1840457a321d1b18093a445 *src/dEploidr.cpp
6e0f7d4dcd22728e243190a8fb750443 *src/r_random_generator.h
eedb9b59a5a966b63e9e82308caf7349 *src/test_exports.cpp
e095660d571c0f3ef91ce1211ecb7f76 *tests/testthat.R
942fb62359240c568894a81ad8ba1ce3 *tests/testthat/test-DEploid_tools.R
e6096201933e4b6042e165bca5d80db7 *tests/testthat/test-dEploid.R
f66b335af2d854e56592824fc8df7a0a *tests/testthat/test-r_random-generator.R
4c6f85b3125573a004b0239c9f93c584 *vignettes/dEploid-Arguments.Rmd
