78aa032bad141db1e5f5d7b09ea38e94 *ChangeLog
f376e392a018e33e1e262c42604bae78 *DESCRIPTION
4464005eea452f562b03d4ebb3c22277 *NAMESPACE
43f542443072e6edc162024c033d06a0 *R/RadixForestR6.R
8a066c56450d1ac246602e6ac5b1947b *R/RadixS7.R
bf38163494215fc48e26dc555c60c720 *R/RadixTreeR6.R
9a994abd4bc7d70fa5ddb8ab33754a2b *R/RadixTree_search_helpers.R
4f5f11c0099557d7ea4ea8c69a8ff663 *R/RcppExports.R
2e413cda36aba4a6914f6fdb79c6ed6d *R/StarS7.R
6011304459196851884229dbcbd5e4b9 *R/StarTreeR6.R
5b8d0a3f341db5e4e339914466f2ea67 *R/covid_cdr3_data.R
e7092946ac7c27f4610ac5a3f7fc6eed *R/covid_receptors_data.R
3899cb61979a56b45c2c38987659b910 *R/pairwise.R
7c681b8e1c45816b70f741a2da99ad3f *R/utils.R
3721f824c525a050ac125c71aeb6b6dc *R/zzz.R
104ed51fd5a3e669677864b0e018ed23 *README.md
1bf18d9c216b8d95033f0bd2fe2906b2 *build/partial.rdb
8363d6712edb4fc8bea40c73b8bfd6d9 *build/vignette.rds
9ffe24bcdacb679255ae8f313363717b *data/covid_cdr3.RData
039ed0f5c9c12be48d4ea8d79b4ff48f *data/covid_receptors.RData
169f2cf65922098193335d6dd3c5e801 *inst/doc/vignette.R
458cfc0a765c1a0bfb5255aa9a4dfc31 *inst/doc/vignette.html
13023d97a15ffe09f242890deff3ba1c *inst/doc/vignette.rmd
07e2e46d7ee8ad2e47a36607f3e9f98e *inst/include/ankerl/unordered_dense.h
5ce7887238d5043d6eb8bdc6400dfc63 *inst/include/nonstd/span.hpp
a50313be78080c29cfada069c064b4f8 *inst/include/seqtrie/node_pool.h
cf70a87f7720b19b75ff44f8fd1b141a *inst/include/seqtrie/pairwise.h
c7b8e33d494204bd34b564478f5d094f *inst/include/seqtrie/radix_child_map.h
4646083383cd646136fb2a37dc5ab0ad *inst/include/seqtrie/radix_forest.h
f613de6b7bcdaf9b21850b19a1131198 *inst/include/seqtrie/radix_tree.h
6b473a3d26ca6594b4ee133d303f466e *inst/include/seqtrie/radixmap.h
26d8bba76dceb65573d370fca8aee7d1 *inst/include/seqtrie/seqtrie.h
f1048abbe505d3c8ebe4cb02728b6a79 *inst/include/seqtrie/utility.h
f139902939ca13d61b2f9f655daa0c56 *inst/include/simple_array/nullable_array.h
26e3da683467ca4e28f76c183303052a *inst/include/simple_array/simple_array.h
f1c1cbf1a59f94d29b901509f68dd7eb *inst/include/simple_array/small_array.h
f159cf783fadab0fa51a45574b78eed8 *inst/include/simple_array/small_nullable_array.h
5e7818084a26d540e5acbd115f1babff *inst/include/simple_array_tests.cpp
de65e29a9cac61a0997da469cbea483c *inst/include/simple_progress/simple_progress.h
8e8b8d55b5110531b239730be968a10f *inst/include/simple_progress_openmp_tests.cpp
9a7b67f36f7cde3f647f961de6b581cc *inst/include/simple_progress_tests.cpp
a29ce366f5fbb57cdc3e84b6ffaee736 *inst/include/startree/anchored_custom_trie.h
bf733bef98c87371d03d8f41e327d404 *inst/include/startree/anchored_standard_trie.h
8dd1f1837530ac35c34b43c878799c58 *inst/include/startree/bits.h
fa8ceac70c8ae97341f840696e22a7f8 *inst/include/startree/common.h
ce60c0eba89a0dbcab80000f2e43ea37 *inst/include/startree/custom_trie.h
0486e273a468f5911c363cd1a76e0df3 *inst/include/startree/hamming_trie.h
eec336f4cb1ef9a98cb9a1994299db20 *inst/include/startree/prefilter.h
e186f3513b69a53945098b78c7b253db *inst/include/startree/standard_trie.h
2624b05c2b310832d1beef4874a64b55 *inst/include/startree/startree.h
9950591662a74dcf23adbf568f28a6d8 *inst/include/startree/trie.h
e4224ccaecb14d942c71d31bef20d78c *inst/licenses/span-lite-BSL-1.0-LICENSE
d32239bcb673463ab874e80d47fae504 *inst/licenses/starcode-GPL-3-LICENSE
d7f1a712ecdecf0efac2f6a99e39ce17 *man/RadixForest.Rd
17bc9d27dacf5f60224dd8a143e15f4d *man/RadixTree.Rd
650af7baa45eba3fe3e6623b3674815b *man/StarTree.Rd
222d6099b50019e441fdb95d97e5f66b *man/align_search.Rd
06adc18919080d76e70d85b3a27e1511 *man/covid_cdr3.Rd
a971046be8dc2eeda639009285b6eddd *man/covid_receptors.Rd
d66d6047de3db82ad9ce7242bd45e908 *man/dist_matrix.Rd
9d665155df0b057b855119729804808f *man/dist_pairwise.Rd
82ff25e0b821ded7a6ae9d9f39d21155 *man/dist_search.Rd
0479eb63e03427235c3c7eb4920f21ce *man/erase.Rd
fd5696ebf5619da618e03aa624283b21 *man/generate_cost_matrix.Rd
f4b6411e61310730b10fb570089d1958 *man/has_sequence.Rd
dd014f6d6588a06ff2f25b886f46de77 *man/insert.Rd
80d3c82cc614f7ed40494d1c929f6571 *man/is_valid.Rd
4fdb1cb4929df066f10505ca92c4f139 *man/plot_tree.Rd
9968648535158e84edf1c061a3146a6f *man/prefix_search.Rd
34f8dd56f2b380641adab32ef3fcf959 *man/radix_forest.Rd
2b20acc22b297106c50573b55ea9b4c2 *man/radix_tree.Rd
ee312feb2383e8d9142d12a38c741cd6 *man/result.Rd
26fa86792e7dc0cdcd38cc30c932e2fe *man/single_gap_search.Rd
53affc1f2f89a5d9565e79a65c4db1d3 *man/size.Rd
cfb2c7ccdbb217268e88c9ba9ea57282 *man/split_search.Rd
38634a5d1c0f48ddadc6d54a1f1de5ab *man/star_tree.Rd
76b400493704c33997f4e94396c5ac1e *man/to_string.Rd
6776e8b26ef47a23c7b99dd1b56f39d3 *man/to_vector.Rd
7af0c4e4e631e8dd1b61eebf0fb9f288 *src/CharCounter.cpp
32d375fd3a309935952f16348b27a5a2 *src/Makevars
fb9e8eb91041863fad764c3edabd150e *src/Makevars.win
62425fbd3bd3eb60f8e8c6f5a8c9f647 *src/RadixForest.cpp
af9b9a28ece320f4498d42f9ba7e7977 *src/RadixTree.cpp
a1589fbd613d0d8f4d311d79dbfc43c5 *src/RcppExports.cpp
2497f78c76d757695c07b02c8d70dcd7 *src/StarTree.cpp
5c7794c9ba95a30fb750ecf93f0be418 *src/pairwise.cpp
11f6a18128b30f4ce2a8b83cda298218 *src/seqtrie_types.h
f40ddc247ef7d9cd661b4a81dc2e6598 *src/split_search.cpp
b372c75f74afe53861e39302f5756318 *tests/test_RadixForest.R
2da4e694e1288972398d9fa286ad2c08 *tests/test_RadixTree.R
2cc154ec84c67237e7c7f466a61f9f13 *tests/test_StarTree.R
8f486b273031b98089235648a8fa0515 *tests/test_pairwise.R
a46dce06aa1fdf49ac3700ec0fed4a70 *tests/test_utilities.R
4fa268656404a8949031746afd6688c6 *vignettes/simple_tree.png
13023d97a15ffe09f242890deff3ba1c *vignettes/vignette.rmd
686d4b8b4210c914d92d0f0c3da8420d *vignettes/vignette_benchmark.png
