Compare Groups, Analytically and Graphically

Documentation for package ‘cg’ version 1.0-4

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A B C D E F G I K M N O P Q R S T U V X Y

Compare Groups, Analytically and Graphically

-- A --

aftfit-class	cg package Internal Virtual Classes
anorexiaFT	AnorexiaFT Data Set in the cg package

-- B --

blockDiag	cg package Internal Utilities
boxplot-method	Box Plot Graph of Groups from a cgOneFactorData object
boxplot.cgOneFactorData	Box Plot Graph of Groups from a cgOneFactorData object
boxplotcensoreddata	cg package Internal Utilities
boxplotStamp	cg package Internal Utilities

-- C --

canine	Canine Data Set in the cg package
canine.listfmt	Canine Data Set in the cg package
catCharExpr	cg package Internal Utilities
cg	Compare Groups, Analytically and Graphically
cg.largest.empty	cg package Internal Utilities
cgDevice	cg package Internal Utilities
cgInternalClasses	cg package Internal Virtual Classes
cgInternalUtilities	cg package Internal Utilities
cgLineColors	Color Choice order for Graph Lines
cgMessage	cg package Internal Utilities
cgOneFactorComparisonsTable	Create a table of comparisons amongst groups with the cgOneFactorFit object
cgOneFactorComparisonsTable-class	Create a table of comparisons amongst groups with the cgOneFactorFit object
cgOneFactorData	Prepare data object from a data frame for One Factor / One-Way / Unpaired Samples evaluations
cgOneFactorData-class	Prepare data object from a data frame for One Factor / One-Way / Unpaired Samples evaluations
cgOneFactorDescriptiveTable	Compute Descriptive Summary Statistics of Groups in a cgOneFactorData object
cgOneFactorDescriptiveTable-class	Compute Descriptive Summary Statistics of Groups in a cgOneFactorData object
cgOneFactorDownweightedTable	Create a table of downweighted observations from a Resistant & Robust fit.
cgOneFactorDownweightedTable-class	Create a table of downweighted observations from a Resistant & Robust fit.
cgOneFactorFit	Fit models to a cgOneFactorData object
cgOneFactorFit-class	Fit models to a cgOneFactorData object
cgOneFactorGlobalTest	Perform a global Test of significance with cgOneFactorFit object
cgOneFactorGlobalTest-class	Perform a global Test of significance with cgOneFactorFit object
cgOneFactorGrpSummaryTable	Create a table of estimated group means and variability with a cgOneFactorFit object.
cgOneFactorGrpSummaryTable-class	Create a table of estimated group means and variability with a cgOneFactorFit object.
cgOneFactorSampleSizeTable	Estimate Sample Sizes based on a cgOneFactorFit object
cgOneFactorSampleSizeTable-class	Estimate Sample Sizes based on a cgOneFactorFit object
cgPairedDifferenceComparisonsTable	Create a table of comparisons between two groups with the cgPairedDifferenceFit object
cgPairedDifferenceComparisonsTable-class	Create a table of comparisons between two groups with the cgPairedDifferenceFit object
cgPairedDifferenceCorrelationTable	Compute Correlations from a cgPairedDifferenceData object
cgPairedDifferenceCorrelationTable-class	Compute Correlations from a cgPairedDifferenceData object
cgPairedDifferenceData	Prepare data object from a data frame for Paired Samples evaluations
cgPairedDifferenceData-class	Prepare data object from a data frame for Paired Samples evaluations
cgPairedDifferenceDescriptiveTable	Compute Descriptive Summary Statistics of Groups in a cgPairedDifferenceData object
cgPairedDifferenceDescriptiveTable-class	Compute Descriptive Summary Statistics of Groups in a cgPairedDifferenceData object
cgPairedDifferenceDownweightedTable	Create a table of downweighted observations from a Resistant & Robust fit.
cgPairedDifferenceDownweightedTable-class	Create a table of downweighted observations from a Resistant & Robust fit.
cgPairedDifferenceFit	Fit models to a cgPairedDifferenceData object
cgPairedDifferenceFit-class	Fit models to a cgPairedDifferenceData object
cgPairedDifferenceSampleSizeTable	Estimate Sample Sizes based on a cgPairedDifferenceFit object
cgPairedDifferenceSampleSizeTable-class	Estimate Sample Sizes based on a cgPairedDifferenceFit object
cgPairedDifferenceVarianceTable	Compute Variances from a cgPairedDifferenceFit object
cgPairedDifferenceVarianceTable-class	Compute Variances from a cgPairedDifferenceFit object
cgValidity	cg package Validity Checks
characterOrExpression-class	cg package Internal Virtual Classes
characterOrNULL-class	cg package Internal Virtual Classes
chop.matrix	cg package Internal Utilities
chopZeroes	cg package Internal Utilities
comparisons	Create a table of comparisons amongst groups
comparisonsGraph	Graph comparisons specified amongst groups
comparisonsgraph	Create an graph of comparisons
comparisonsGraph-method	Create an graph of the comparisons in a cgOneFactorComparisonsTable object
comparisonsGraph-method	Create an graph of the comparisons in a cgPairedDifferenceComparisonsTable object
comparisonsGraph.cgOneFactorComparisonsTable	Create an graph of the comparisons in a cgOneFactorComparisonsTable object
comparisonsGraph.cgPairedDifferenceComparisonsTable	Create an graph of the comparisons in a cgPairedDifferenceComparisonsTable object
comparisonsGraphStamp	cg package Internal Utilities
comparisonsTable	Create a Table of Comparisons amongst Groups
comparisonsTable-method	Create a table of comparisons amongst groups with the cgOneFactorFit object
comparisonsTable-method	Create a table of comparisons between two groups with the cgPairedDifferenceFit object
comparisonsTable.cgOneFactorFit	Create a table of comparisons amongst groups with the cgOneFactorFit object
comparisonsTable.cgPairedDifferenceFit	Create a table of comparisons between two groups with the cgPairedDifferenceFit object
contrastMatrix	cg package Internal Utilities
correlationTable	Compute Correlations
correlationTable-method	Compute Correlations from a cgPairedDifferenceData object
correlationTable.cgPairedDifferenceData	Compute Correlations from a cgPairedDifferenceData object

-- D --

dataframeMatrixOrNULL-class	cg package Internal Virtual Classes
dataframeOrNULL-class	cg package Internal Virtual Classes
descriptive.censoreddata	cg package Internal Utilities
descriptiveTable	Compute Descriptive Summary Statistics of Groups
descriptiveTable-method	Compute Descriptive Summary Statistics of Groups in a cgOneFactorData object
descriptiveTable-method	Compute Descriptive Summary Statistics of Groups in a cgPairedDifferenceData object
descriptiveTable.cgOneFactorData	Compute Descriptive Summary Statistics of Groups in a cgOneFactorData object
descriptiveTable.cgPairedDifferenceData	Compute Descriptive Summary Statistics of Groups in a cgPairedDifferenceData object
diffGraph	Graph Paired Differences
diffGraph-method	Graph Paired Differences from a cgPairedDifferenceData object
diffGraph.cgPairedDifferenceData	Graph Paired Differences from a cgPairedDifferenceData object
downweightedTable	Create a table of downweighted observations from a Resistant & Robust fit.
downweightedTable-method	Create a table of downweighted observations from a Resistant & Robust fit.
downweightedTable-method	Create a table of downweighted observations from a Resistant & Robust fit.
downweightedTable.cgOneFactorFit	Create a table of downweighted observations from a Resistant & Robust fit.
downweightedTable.cgPairedDifferenceFit	Create a table of downweighted observations from a Resistant & Robust fit.

-- E --

errorBarGraph	Create an Error Bar graph amongst groups
errorbargraph	Create an error bar graph based on pairwise multiple comparisons
errorBarGraph-method	Create an Error Bar graph amongst groups in a cgOneFactorFit object
errorBarGraph.cgOneFactorFit	Create an Error Bar graph amongst groups in a cgOneFactorFit object
errorBarGraphApproximateStamp	cg package Internal Utilities
errorBarGraphStamp	cg package Internal Utilities

-- F --

factorInSeq	cg package Internal Utilities
fit	Fit models to data
fit-method	Fit models to a cgOneFactorData object
fit-method	Fit models to a cgPairedDifferenceData object
fit.cgOneFactorData	Fit models to a cgOneFactorData object
fit.cgPairedDifferenceData	Fit models to a cgPairedDifferenceData object
fmtDifference	cg package Internal Utilities
fmtPercent	cg package Internal Utilities
fmtPvalue	cg package Internal Utilities
fmtRatio	cg package Internal Utilities
fmtRatioToPercent	cg package Internal Utilities
fround	cg package Internal Utilities
fround.charcens	cg package Internal Utilities

-- G --

geoMean	cg package Internal Utilities
getDotsArgName	cg package Validity Checks
getNumDigits	cg package Internal Utilities
globalTest	Perform a global test of significance
globalTest-method	Perform a global Test of significance with cgOneFactorFit object
globalTest.cgOneFactorFit	Perform a global Test of significance with cgOneFactorFit object
gmcsfcens	GM-CSF censored data set in the cg package
gmcsfcens.listfmt	GM-CSF censored data set in the cg package
gmcsfcens.listfmt1	GM-CSF censored data set in the cg package
gmcsfcens.listfmt2	GM-CSF censored data set in the cg package
gmcsfcens.listfmt3	GM-CSF censored data set in the cg package
graphStampCG	cg package Internal Utilities
grpsummary	cg package Internal Utilities
grpSummaryTable	Create a table of estimated group means and variability
grpSummaryTable-method	Create a table of estimated group means and variability with a cgOneFactorFit object.
grpSummaryTable.cgOneFactorFit	Create a table of estimated group means and variability with a cgOneFactorFit object.

-- I --

isAllEqual

cg package Internal Utilities

-- K --

kmGraph	Graph Distribution Functions of Groups
kmGraph-method	Graph Distribution Functions of Groups in a cgOneFactorData object
kmGraph.cgOneFactorData	Graph Distribution Functions of Groups in a cgOneFactorData object

-- M --

makeCensored	cg package Internal Utilities
makeContrastVec	cg package Internal Utilities
makeEndptLabel	cg package Internal Utilities
makeTickMarks	cg package Internal Utilities
makeZeroScore	cg package Internal Utilities
minmaxTicks	cg package Internal Utilities
multcompDone	cg package Internal Utilities
multcompInform	cg package Internal Utilities

-- N --

numericOrNULL-class

cg package Internal Virtual Classes

-- O --

olsfit-class

cg package Internal Virtual Classes

-- P --

pairwisecompsmatrix	cg package Internal Utilities
paragraphWrap	cg package Internal Utilities
parsePartialName	cg package Validity Checks
pctToRatio	cg package Internal Utilities
plotGrpNameTicks	cg package Internal Utilities
pointGraph	Graph Individual Data Points of Groups
pointGraph-method	Graph Individual Data Points in a cgOneFactorData object
pointGraph.cgOneFactorData	Graph Individual Data Points in a cgOneFactorData object
prepare	Prepare a cg data object from a data frame
prepareCGOneFactorData	Prepare data object from a data frame for One Factor / One-Way / Unpaired Samples evaluations
prepareCGPairedDifferenceData	Prepare data object from a data frame for Paired Samples evaluations
print-method	Print One Factor Comparisons Table object with some format options
print-method	Print a One Factor Descriptive Table object with some format options
print-method	Print Downweighted Observations Table object with some format options
print-method	Print One Factor Model Fit object with some format options
print-method	Print One Factor Global F-test object with some format options
print-method	Print One Factor Group Summary Table object with some format options
print-method	Print a One Factor Sample Size Table object with some format options
print-method	Print Paired Difference Comparisons Table object with some format options
print-method	Print a Paired Difference Correlation Table object with some format options
print-method	Print a Paired Difference Descriptive Table object with some format options
print-method	Print Downweighted Observations Table object with some format options
print-method	Print One Factor Model Fit object with some format options
print-method	Print a Paired Difference Sample Size Table object with some format options
print-method	Print a Paired Difference Variance Table object with some format options
print.cgOneFactorComparisonsTable	Print One Factor Comparisons Table object with some format options
print.cgOneFactorDescriptiveTable	Print a One Factor Descriptive Table object with some format options
print.cgOneFactorDownweightedTable	Print Downweighted Observations Table object with some format options
print.cgOneFactorFit	Print One Factor Model Fit object with some format options
print.cgOneFactorGlobalTest	Print One Factor Global F-test object with some format options
print.cgOneFactorGrpSummaryTable	Print One Factor Group Summary Table object with some format options
print.cgOneFactorSampleSizeTable	Print a One Factor Sample Size Table object with some format options
print.cgPairedDifferenceComparisonsTable	Print Paired Difference Comparisons Table object with some format options
print.cgPairedDifferenceCorrelationTable	Print a Paired Difference Correlation Table object with some format options
print.cgPairedDifferenceDescriptiveTable	Print a Paired Difference Descriptive Table object with some format options
print.cgPairedDifferenceDownweightedTable	Print Downweighted Observations Table object with some format options
print.cgPairedDifferenceFit	Print One Factor Model Fit object with some format options
print.cgPairedDifferenceSampleSizeTable	Print a Paired Difference Sample Size Table object with some format options
print.cgPairedDifferenceVarianceTable	Print a Paired Difference Variance Table object with some format options
profileGraph	Graph Profiles of Experimental Units
profileGraph-method	Graph Profiles of Experimental Unit Pairs in a cgPairedDifferenceData object
profileGraph.cgPairedDifferenceData	Graph Profiles of Experimental Unit Pairs in a cgPairedDifferenceData object

-- Q --

qminmin	cg package Internal Utilities
qqGraph	Quantile-Quantile Graphs
qqGraph-method	Quantile-Quantile (QQ) Graphs of a cgOneFactorFit object
qqGraph-method	Quantile-Quantile (QQ) Graphs of a cgPairedDifferenceFit object
qqGraph.cgOneFactorFit	Quantile-Quantile (QQ) Graphs of a cgOneFactorFit object
qqGraph.cgPairedDifferenceFit	Quantile-Quantile (QQ) Graphs of a cgPairedDifferenceFit object

-- R --

rangeExtend	cg package Internal Utilities
reportInvalidArg	cg package Validity Checks
residualgrptrend.helper	cg package Internal Utilities
rmTicks	cg package Internal Utilities
rrfit-class	cg package Internal Virtual Classes

-- S --

samplesize	cg package Internal Utilities
samplesize.default	cg package Internal Utilities
samplesizeGraph	Graph Estimated Sample Sizes
samplesizegraph	cg package Internal Utilities
samplesizeGraph-method	Graph estimated sample sizes from a cgOneFactorSampleSizeTable object
samplesizeGraph-method	Graph estimated sample sizes from a cgPairedDifferenceSampleSizeTable object
samplesizeGraph.cgOneFactorSampleSizeTable	Graph estimated sample sizes from a cgOneFactorSampleSizeTable object
samplesizeGraph.cgPairedDifferenceSampleSizeTable	Graph estimated sample sizes from a cgPairedDifferenceSampleSizeTable object
samplesizeTable	Estimate Required Sample Sizes
samplesizeTable-method	Estimate Sample Sizes based on a cgOneFactorFit object
samplesizeTable-method	Estimate Sample Sizes based on a cgPairedDifferenceFit object
samplesizeTable.cgOneFactorFit	Estimate Sample Sizes based on a cgOneFactorFit object
samplesizeTable.cgPairedDifferenceFit	Estimate Sample Sizes based on a cgPairedDifferenceFit object
scaleVar	cg package Internal Utilities
seeHelpFile	cg package Internal Utilities
setupAxisTicks	cg package Internal Utilities
setupGrpNameTicks	cg package Internal Utilities
setupLog10AxisTicks	cg package Internal Utilities
show-method	Show a One Factor Comparisons Table object from the cg package
show-method	Show a One Factor Descriptive Table object from the cg package
show-method	Show a One Factor Downweighted Table object from the cg package
show-method	Show a Global Test object from the cg package
show-method	Show a One Factor Group Summary Table object from the cg package
show-method	Show a One Factor Sample Size Table object from the cg package
show-method	Show a Paired Difference Data Comparisons Table object from the cg package
show-method	Show a Paired Difference Correlation Table object from the cg package
show-method	Show a Paired Difference Descriptive Table object from the cg package
show-method	Show a Paired Difference Downweighted Table object from the cg package
show-method	Show a Paired Difference Sample Size Table object from the cg package
show-method	Show a Paired Difference Variance Table object from the cg package
show.cgOneFactorComparisonsTable	Show a One Factor Comparisons Table object from the cg package
show.cgOneFactorDescriptiveTable	Show a One Factor Descriptive Table object from the cg package
show.cgOneFactorDownweightedTable	Show a One Factor Downweighted Table object from the cg package
show.cgOneFactorGlobalTest	Show a Global Test object from the cg package
show.cgOneFactorGrpSummaryTable	Show a One Factor Group Summary Table object from the cg package
show.cgOneFactorSampleSizeTable	Show a One Factor Sample Size Table object from the cg package
show.cgPairedDifferenceComparisonsTable	Show a Paired Difference Data Comparisons Table object from the cg package
show.cgPairedDifferenceCorrelationTable	Show a Paired Difference Correlation Table object from the cg package
show.cgPairedDifferenceDescriptiveTable	Show a Paired Difference Descriptive Table object from the cg package
show.cgPairedDifferenceDownweightedTable	Show a Paired Difference Downweighted Table object from the cg package
show.cgPairedDifferenceSampleSizeTable	Show a Paired Difference Sample Size Table object from the cg package
show.cgPairedDifferenceVarianceTable	Show a Paired Difference Variance Table object from the cg package
showObj	Show raw form of an object from the cg package
showObj-method	Show a Fitted Model object from the cg package
showObj-method	Show a Fitted Model object from the cg package
showObj.cgOneFactorFit	Show a Fitted Model object from the cg package
showObj.cgPairedDifferenceFit	Show a Fitted Model object from the cg package
stndErr	cg package Internal Utilities
stripmiss	cg package Internal Utilities
summary-method	Summary display of a One Factor Model Fit object with some format options
summary-method	Summary display of a Paired Difference Model Fit object with some format options
summary.cgOneFactorFit	Summary display of a One Factor Model Fit object with some format options
summary.cgPairedDifferenceFit	Summary display of a Paired Difference Model Fit object with some format options

-- T --

trimWhiteSpace	cg package Internal Utilities
tryAgain	cg package Internal Utilities

-- U --

unpaste	cg package Internal Utilities
unwind	cg package Internal Utilities
unwrap	cg package Internal Utilities
uvfit-class	cg package Internal Virtual Classes

-- V --

validAddConstant	cg package Validity Checks
validAft	cg package Validity Checks
validAlpha	cg package Validity Checks
validArgDigits	cg package Validity Checks
validArgMatch	cg package Validity Checks
validArgModel	cg package Validity Checks
validAtomicVec	cg package Validity Checks
validBoolean	cg package Validity Checks
validCensor	cg package Validity Checks
validCGOneFacGroupColDfr	cg package Validity Checks
validCGOneFacListedDfr	cg package Validity Checks
validCharacter	cg package Validity Checks
validComparisonType	cg package Validity Checks
validCutoffWt	cg package Validity Checks
validDataFormat	cg package Validity Checks
validDenDf	cg package Validity Checks
validDotsArg	cg package Validity Checks
validDotsArgs	cg package Validity Checks
validEqualLength	cg package Validity Checks
validErrorDf	cg package Validity Checks
validEstimates	cg package Validity Checks
validFitType	cg package Validity Checks
validGrpNames	cg package Validity Checks
validList	cg package Validity Checks
validN	cg package Validity Checks
validNumeric	cg package Validity Checks
validNumericOrCensored	cg package Validity Checks
validPower	cg package Validity Checks
validZeroScore	cg package Validity Checks
varianceGraph	Variance Graphs
varianceGraph-method	Equal Variance Graphs assessment of cgOneFactorFit object
varianceGraph.cgOneFactorFit	Equal Variance Graphs assessment of cgOneFactorFit object
varianceTable	Compute Variance Components
varianceTable-method	Compute Variances from a cgPairedDifferenceFit object
varianceTable.cgPairedDifferenceFit	Compute Variances from a cgPairedDifferenceFit object

-- X --

xTicksCex

cg package Internal Utilities

-- Y --

yTicksCex

cg package Internal Utilities