| correlations | Compute different types of correlations. | 
| CRDR | Calculate the correlated response to selection | 
| diagnostics | Get diagnostics for an object of class varComp | 
| dropsPheno | DROPS data set | 
| fitted.AMMI | Extract fitted values. | 
| fitted.FW | Extract fitted values. | 
| fitted.varCov | Extract fitted values. | 
| gxeAmmi | AMMI analysis | 
| gxeFw | Finlay-Wilkinson analysis | 
| gxeGGE | GGE analysis | 
| gxeMegaEnv | Form mega environments based on fitted values from an AMMI model | 
| gxeStability | Calculate stability coefficients for genotype-by-environment data | 
| gxeVarComp | Mixed model analysis of GxE table of means | 
| gxeVarCov | Selects the best variance-covariance model for a set of trials | 
| herit | Calculate heritability | 
| multMissing | Estimate missing values in multivariate data | 
| plot.AMMI | Plot function for class AMMI | 
| plot.FW | Plot function for class FW | 
| plot.megaEnv | Plot function for class megaEnv | 
| plot.stability | Plot function for class stability | 
| plot.varComp | Plot function for class varComp | 
| plot.varCov | Plot function for class varCov | 
| predict.megaEnv | Compute BLUPS based on a set of mega environments | 
| predict.varComp | Predictions based on a fitted varComp model. | 
| report.AMMI | Report method for class AMMI | 
| report.FW | Report method for class FW | 
| report.stability | Report method for class stability | 
| report.varCov | Report method for class varCov | 
| residuals.AMMI | Extract residuals. | 
| residuals.FW | Extract residuals. | 
| residuals.varCov | Extract residuals. | 
| TDMaize | Field data for a maize experiment in Tlaltizapan, Mexico | 
| vc | Extract variance components |