| demo_biseq_DMR | BiSeq Output Demo Dataset | 
| demo_biseq_methyrate | BiSeq Methyrate Demo Dataset | 
| demo_desq_out | DESeq Output Dataset | 
| demo_DMRfinder_DMRs | DMRfinder Output Demo Dataset | 
| demo_DMRfinder_rate_combine | DMRfinder Methyrate Demo Dataset | 
| demo_methylkit_methyrate | Methyrate Dataset | 
| demo_methylkit_met_all | Methyrate output dataset from methylKit | 
| demo_metilene_input | Metilene Methyrate Demo Dataset | 
| demo_metilene_out | Metilene Demo Output Dataset | 
| evalue_buildin_sql | Build-in data process function | 
| evalue_buildin_var_fmt_nm | Build-in check file format function Perform the format check and data clean for the "metilene" or "biseq", "DMRfinder" or "methylKit" method correspondingly. | 
| metevalue.biseq | Calculate E-value of the BiSeq data format | 
| metevalue.biseq.chk | Check the BiSeq data format | 
| metevalue.DMRfinder | Calculate E-value of the DMRfinder data format | 
| metevalue.DMRfinder.chk | Check the DMRfinder data format | 
| metevalue.methylKit | Calculate E-value of the methylKit data format | 
| metevalue.methylKit.chk | Check the methylKit data format | 
| metevalue.metilene | Calculate E-value of the Metilene data format | 
| metevalue.metilene.chk | Check the Metilene data format | 
| metevalue.RNA_general | A general method to calculate the e-value for RNA-seq data. | 
| varevalue.metilene | Calculate E-value of the Metilene data | 
| varevalue.single_general | A general method to calculate the e-value for other DNA methylation tools not described above. The input data is the DNA methylation rates using the similar format with Metilene. |