Assessment of Diagnostic and Prognostic Markers

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Documentation for package ‘sMSROC’ version 0.1.2

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auc_ci_boot Confidence intervals for the AUC (bootstrap)
auc_ci_empr Confidence intervals for the AUC (empirical variance estimation)
auc_ci_nvar Confidence intervals for the AUC (theoretical variance estimation)
check_ci_cl Check confidence level for AUC's confidence intervals
check_conf_int Checks for parameters to compute the confidence intervals for the AUC
check_grid Check grid
check_marker_binout Checks of diagnosis scenarios
check_marker_timeic Check of prognosis scenarios under interval censorship
check_marker_timerc Check of prognosis scenarios under right censorship
check_meth Check the method for estimating the predictive model
check_nboots Check number of bootstrap samples
check_ncpus Check number of CPUs
check_tim Check tim
check_type_outcome Check the type of scenario (diagnosis/prognosis)
compute_ROC Weighted empirical ROC curve estimator
conf_int_print AUC and confidence intervals
diabet Diabetes dataset
evol_auc Evolution of the AUCs
explore_plot Graphical exploratory data analysis
explore_table Exploratory data analysis
fibrosis Fibrosis dataset
ktfs KTFS dataset
pred_model_binout Predictive model estimation in diagnosis scenarios
pred_model_emp Predictive model (naive estimation)
pred_model_timeic Predictive model in prognosis scenarios (I)
pred_model_timerc Predictive model in prognosis scenarios (II)
print.sMSROC Print sMSROC
probs_pred Plot of the predictive model
sMSROC sMS ROC curve estimator computation
sMSROC_plot Plot of the sMS ROC curve estimate
sMS_binout sMS estimator for diagnostic biomarkers
sMS_timeic sMS estimator for prognostic biomarkers and interval censoring
sMS_timerc sMS estimator for prognostic biomarkers and right censorship
variance_probs Variance of the predictive model