'PLINK' (and 'GCTA') File Helpers

Documentation for package ‘plinkFile’ version 0.2.1

bed	travers variants in a PLINK1 BED fileset
CHR	A dictionary to map chromosome names to integers.
DBT	A decoding byte table to map raw intergers to genotype dosages.
loopBED	travers variants in a PLINK1 BED fileset
readBED	Read BED file
readBIM	Read BIM file
readBSM	Read Binary Symmetric Matrix (BSM)
readFAM	Read FAM file
readGRM	Read Genetic Related Matrix (GRM) of GCTA
readIBS	Read PLINK Binary IBS matrix
readIID	read individual ID
readREL	Read PLINK Binary REL matrix
readVCM	Read Variant Count Matrix (VCM) accompanying a GCTA GRM
readVID	read variant ID
saveBED	Save BED file
saveBSM	Save Symmetric Matrix to Binary
saveGRM	Save symmetic matrix to GCTA GRM format.
scanBED	travers variants in a PLINK1 BED fileset
testReadBED	Test BED Reader
testReadBSM	Test Genetic Relatedness Matrix Reader