| BBA | Dataset of setophaga caerulescens obtained from the Pennsylvania Atlas of Breeding Birds. | 
| BBS | Dataset of setophaga caerulescens obtained from the North American Breeding Bird survey across Pennsylvania state. | 
| BBSColinusVirginianus | Dataset of Colinus Virginianus obtained from the North American Breeding Bird survey across Alabama state. | 
| blockedCV | _blockedCV_: run spatial blocked cross-validation on the integrated model. | 
| blockedCV-class | Export class blockedCV | 
| blockedCVpred-class | Export class blockedCVpred | 
| bruSDM-class | Export bru_sdm class | 
| bruSDM_predict-class | Export class predict_bru_sdm | 
| changeCoords | _changeCoords_: function used to change coordinate names. | 
| checkCoords | _checkCoords_: function used to check coordinate names. | 
| checkVar | _checkVar_: Function used to check variable names. | 
| data2ENV | _data2ENV_: function used to move objects from one environment to another. | 
| dataOrganize | R6 class to assist in reformatting the data to be used in dataSDM. | 
| dataSet | Internal function used to standardize datasets, as well as assign metadata. | 
| datasetOut | _datasetOut_: function that removes a dataset out of the main model, and calculates some cross-validation score. | 
| datasetOut-class | Export class bru_sdm_leave_one_out | 
| eBird | data.frame object containing solitary tinamou observations from eBird | 
| elev_raster | Raster object containing the elevation across Pennsylvania state. | 
| fitISDM | _fitISDM_: function used to run the integrated model. | 
| Gbif | data.frame object containing solitary tinamou observations from Gbif | 
| intModel | _intModel_: Function used to initialize the integrated species distribution model. | 
| Koala | Dataset of Eucalyptus globulus (common name: blue gum) sightings collected across the Koala conservation reserve on Phillip island (Australia) between 1993 and 2004. Two marks are considered from this dataset: "koala" which describes the number of koala visits to each tree, and "food" which is some index of the palatability of the leaves. | 
| makeFormulaComps | _makeFormulaComps_: function to make components for the covariate and bias Formulas. | 
| makeLhoods | _makeLhoods_: function to make likelihoods. | 
| modISDM-class | Export modISDM class | 
| modISDM_predict-class | Export class predict.modISDM | 
| modMarks-class | Export modMarks class | 
| modMarks_predict-class | Export class predict_modMarks | 
| modSpecies-class | Export modSpecies class | 
| modSpecies_predict-class | Export class predict_modSpecies | 
| nameChanger | _nameChanger_: function to change a variable name. | 
| nearestValue | nearestValue: Match species location data to environmental raster layers | 
| NLCD_canopy_raster | Raster object containing the canopy cover across Pennsylvania state. | 
| Parks | data.frame object containing solitary tinamou observations from Parks | 
| plot.bruSDM_predict | Generic plot function for 'predict_bru_sdm'. | 
| plot.modISDM_predict | Generic plot function for 'predict_bru_sdm'. | 
| plot.modMarks_predict | Generic plot function for 'predict_bru_sdm'. | 
| plot.modSpecies_predict | Generic plot function for 'predict_bru_sdm'. | 
| predict.bruSDM | Generic predict function for 'bru_SDM' objects. | 
| predict.modISDM | Generic predict function for 'bru_SDM' objects. | 
| predict.modMarks | Generic predict function for 'bru_SDM' objects. | 
| predict.modSpecies | Generic predict function for 'bru_SDM' objects. | 
| print.blockedCV | Print function for 'blockedCV'. | 
| print.blockedCVpred | Print function for 'blockedCV'. | 
| print.bruSDM | Generic print function for 'bruSDM'. | 
| print.bruSDM_predict | Generic print function for 'bru_sdm_predict'. | 
| print.datasetOut | Generic print function for 'datasetOut'. | 
| print.modISDM | Generic print function for 'modISDM'. | 
| print.modMarks | Generic print function for 'modMarks'. | 
| print.modSpecies | Generic print function for 'modSpecies'. | 
| reduceComps | reduceComps: Reduce the components of the model. | 
| region | sf object containing the boundary region for solitary tinamouc | 
| removeFormula | removeFormula: Function to remove term from a formula. | 
| runModel | _runModel_: function used to run the integrated model. Note that this function is depreciated, and will be removed in a later version of the package. | 
| SetophagaData | List of all data objects used for the Setophaga vignette. | 
| SolitaryTinamou | List of all data objects used for the solitary tinamou vignette. | 
| SolTinCovariates | spatRaster object containing covariate values | 
| specifyISDM | R6 class for creating a 'startISDM' object. | 
| specifyMarks | R6 class for creating a 'specifyMarks' object. | 
| specifySpecies | R6 class for creating a 'startSpecies' object. | 
| startISDM | _startISDM_: Function used to initialize the integrated species distribution model. | 
| startMarks | _startMarks_: Function used to initialize a marked-point process model. | 
| startSpecies | _startSpecies_: Function used to initialize a multi-species integrated species distribution model. | 
| summary.bruSDM | Generic summary function for 'bruSDM'. | 
| summary.modISDM | Generic summary function for 'bruSDM'. | 
| summary.modMarks | Generic summary function for 'bruSDM'. | 
| summary.modSpecies | Generic summary function for 'bruSDM'. |