BRACoD: Bayesian Regression Analysis of Compositional Data

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Documentation for package ‘BRACoD.R’ version 0.0.2.0

• DESCRIPTION file.

Help Pages

convergence_tests	Perform convergence tests on the p and beta variables
df_counts_obesity	Example microbiome data
df_counts_obesity,df_scfa	Example microbiome data
df_scfa	Example microbiome data
install_bracod	Install BRACoD in python
obesity	Example microbiome data
remove_null	Remove NULL values in your OTU and environmental variable
run_bracod	Run the main BRACoD algorithm
scale_counts	Normalize OTU counts and add a pseudo count
score	Score the results of BRACoD
simulate_microbiome_counts	Simulate microbiome counts
summarize_trace	Summarize the results of BRACoD
threshold_count_data	Threshold your microbiome counts data