Analysing and Plotting Genotype-Phenotype Maps

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Documentation for package ‘gpmap’ version 0.1.2

• DESCRIPTION file.

Help Pages

gpmap-package	Tools for analysing and plotting genotype-phenotype maps
A	Dataset containing example GP maps
AA	Dataset containing example GP maps
AD	Dataset containing example GP maps
D	Dataset containing example GP maps
DA	Dataset containing example GP maps
DD	Dataset containing example GP maps
decompose_monotone	Decompose genotype-phenotype map(s) using monotone regression
decompose_monotone_single	Decompose genotype-phenotype map(s) using monotone regression
degree_of_monotonicity	Degree of monotonicity of GP map
degree_of_monotonicity_single	Degree of monotonicity of GP map
enumerate_genotypes	Function for enumerating genotypes for N biallelic loci
generate_gpmap	Function for creating genotype-phenotype (GP) maps
gpmap	Function for creating genotype-phenotype (GP) maps
monotone_regression	Perform monotone regression on a genotype-phenotype (GP) map
mouseweight	Dataset containing example GP maps
partial_genotype_order	Generate partial ordering of genotype space based from allele content of genotypes
plot.gpmap	Functions for creating lineplots of genotype-phenotype (GP) maps
plot.gpmap.decomp.mono	Functions for creating lineplots of genotype-phenotype (GP) maps
print.gpmap	Print function for 'gpmap' objects