Interactively Visualize Genetic Mutation Data using a Lollipop-Diagram

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Documentation for package ‘g3viz’ version 1.2.0

• DESCRIPTION file.
• Package NEWS.

Help Pages

g3Lollipop	Render g3lollipop diagram for the given mutation data
g3Lollipop-shiny	Shiny bindings for g3Lollipop
g3Lollipop.options	G3Lollipop plot options
g3Lollipop.theme	G3Lollipop chart options of built-in themes.
g3LollipopOutput	Shiny bindings for g3Lollipop
getMutationsFromCbioportal	Query cancer genomic mutation data from cBioPortal
guessMAFColumnName	Guess column name for MAF file
hgnc2pfam	Map from Hugo symbol to Pfam domains
hgnc2pfam.df	Mapping table between gene.symbol, uniprot.id, and pfam
hgnc2uniprot	Mapping from Hugo symbol to UniProt IDs
mapMutationTypeToMutationClass	Map from mutation type (aka, variant classification) to mutation class
mutation.table.df	Default mapping table between mutation type (aka, variant classification) to mutation class
parseProteinChange	Extract _amino_acid_position_ from _Protein_Change_
readMAF	Read MAF file
renderG3Lollipop	Shiny bindings for g3Lollipop
uniprot2pfam	From UniProt ID to Pfam-A domain composition