Two-Locus Family-Based Association Test with Polytomous Outcome

Documentation for package ‘fat2Lpoly’ version 1.2.5

design.1locus	Setting-up design matrices for a polytomous model with a single biallelic marker.
design.dichotomous	Setting-up the design matrix for a logistic model with two biallelic markers.
design.endo2disease	Setting-up design matrices for the endophenotype-to-disease model.
design.full	Setting-up design matrices for a full polytomous model with two biallelic markers.
fat2Lpoly	Two-locus Family-based Association Test with Polytomous Outcome
fat2Lpoly.allSNPs	Example results output by the function 'fat2Lpoly.withinR'
fat2Lpoly.withinR	Two-locus Family-based Association Test with Polytomous Outcome (all arguments within R)
get.scores.pvalues	function to compute scores and p-values
ped.x.all	Example dataset returned by the function 'read.merlin.files'
read.merlin.files	function to read input files in Merlin format