Building Polygenic Risk Score Using GWAS Summary Statistics
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Documentation for package ‘SummaryLasso’ version 1.2.1
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| funcIndex | Inputs for the functional annotations of SNPs. |
| gsfPEN | SummaryLasso incorporating multiple traits and functional annotations of SNPs. |
| gsPEN | SummaryLasso incorporating multiple traits |
| Nvec | A vector of sample sizes for the q traits of the 'summaryZ'. |
| plinkLD | The LD info from output of the software (plink) |
| summaryZ | The Z statistics from the univariate analysis of the association between 3614 SNPs and three traits respectively. |