Dysregulated Pathway Identification Analysis
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Documentation for package ‘DysPIA’ version 1.3
Help Pages
| calcDyspiaStat | calcDyspiaStat: Calculates DysPIA statistics |
| calcDyspiaStatCumulative | Calculates DysPIA statistic values for all the prefixes of a gene pair set |
| calcDyspiaStatCumulativeBatch | Calculates DysPIA statistic values for the gene pair sets |
| calEdgeCorScore_ESEA | calEdgeCorScore_ESE |
| class.labels_p53 | Example vector of category labels. |
| DysGPS | DysGPS: Calculates Dysregulated gene pair score (DysGPS) for each gene pair |
| DysGPS_p53 | Example vector of DysGPS in p53 data. |
| DysPIA | DysPIA: Dysregulated Pathway Identification Analysis |
| DyspiaRes_p53 | Example list of DysPIA result in p53 data. |
| DyspiaSig | DyspiaSig |
| DyspiaSimpleImpl | DyspiaSimpleImpl |
| gene_expression_p53 | Example matrix of gene expression value. |
| sample_background | Example list of gene pair background. |
| setUpBPPARAM | setUpBPPARAM |