Creates, Merges, and Reads Binary Dosage Files

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Documentation for package ‘BinaryDosage’ version 2.0.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

bdapply	Apply a function to each SNP in a binary dosage file
bdmerge	Merge binary dosage files together
closebd5con	Close a persistent Format 5 connection
genapply	Apply a function to each SNP in a gen, impute2, file
gentobd	Convert a gen file to a binary dosage file
getaaf	Calculate alternate allele frequency
getbd5snp	Read a SNP from a Format 5 binary dosage file
getbd5snp_buf	Read a Format 5 SNP into pre-allocated vectors (buffered variant)
getbd5snp_con	Read a Format 5 SNP using a persistent open connection
getbdinfo	Get information about a binary dosage file
getgeninfo	Get information about a gen, impute2, file
getmaf	Calculate minor allele frequency
getrsq	Calculate imputation r squared
getsnp	Read SNP data from a binary dosage file
getvcfinfo	Get information about a vcf file
mergebd	Merge Format 5 binary dosage files
openbd5con	Open a persistent connection to a Format 5 binary dosage file
subsetbd	Subset a binary dosage file
updatebd	Update a binary dosage file to Format 5
vcfapply	Apply a function to each SNP in a vcf file
vcftobd	Convert a VCF file to Format 5 binary dosage files
vcftobdlegacy	Convert a VCF file to a binary dosage file