transitiontrees-package	transitiontrees-package
ai_long	ai_long
as.data.frame.transitiontrees	as.data.frame.transitiontrees
as.data.frame.transitiontrees_bootstrap	as.data.frame.transitiontrees_bootstrap
as.data.frame.transitiontrees_comparison	as.data.frame.transitiontrees_comparison
as.data.frame.transitiontrees_group	as.data.frame.transitiontrees_group
as.data.frame.transitiontrees_group_comparison	as.data.frame.transitiontrees_group_comparison
bootstrap_pathways	bootstrap_pathways
common_pathways	common_pathways
compare_groups	compare_groups
compare_pruning	compare_pruning
compare_smoothing	compare_smoothing
compare_trees	compare_trees
context_tree	context_tree
divergent_pathways	divergent_pathways
engagement	engagement
generate_sequences	generate_sequences
group_regulation_long	group_regulation_long
impute_sequences	impute_sequences
logLik.transitiontrees	logLik.transitiontrees
mine_contexts	mine_contexts
mine_sequences	mine_sequences
model_fit	model_fit
nobs.transitiontrees	nobs.transitiontrees
n_nodes	n_nodes
pathway_exists	pathway_exists
perplexity	perplexity
plot.transitiontrees	plot.transitiontrees
plot.transitiontrees_bootstrap	plot.transitiontrees_bootstrap
plot.transitiontrees_comparison	plot.transitiontrees_comparison
plot.transitiontrees_group	plot.transitiontrees_group
plot.transitiontrees_group_comparison	plot.transitiontrees_group_comparison
plot.transitiontrees_tune	plot.transitiontrees_tune
plot_difference	plot_difference
plot_distributions	plot_distributions
plot_divergence	plot_divergence
plot_pathways	plot_pathways
plot_pathway_resamples	plot_pathway_resamples
plot_predictive	plot_predictive
plot_pruning	plot_pruning
plot_trajectories	plot_trajectories
predict.transitiontrees	predict.transitiontrees
prepare_input	prepare_input
print.summary.transitiontrees	print.summary.transitiontrees
print.transitiontrees	print.transitiontrees
print.transitiontrees_bootstrap	print.transitiontrees_bootstrap
print.transitiontrees_comparison	print.transitiontrees_comparison
print.transitiontrees_group	print.transitiontrees_group
print.transitiontrees_group_comparison	print.transitiontrees_group_comparison
print.transitiontrees_tune	print.transitiontrees_tune
prune_tree	prune_tree
query_pathway	query_pathway
score_positions	score_positions
score_sequences	score_sequences
sharp_pathways	sharp_pathways
simulate.transitiontrees	simulate.transitiontrees
smooth_tree	smooth_tree
subtree	subtree
summary.transitiontrees	summary.transitiontrees
summary.transitiontrees_bootstrap	summary.transitiontrees_bootstrap
summary.transitiontrees_group_comparison	summary.transitiontrees_group_comparison
trajectories	trajectories
transitiontrees	transitiontrees-package
tree_dependence	tree_dependence
tree_distance	tree_distance
tree_pathways	tree_pathways
tune_tree	tune_tree
