ai_long                 AI-collaboration messages (long format)
as.data.frame.transitiontrees
                        Coerce a context tree to a Tidy Data Frame
as.data.frame.transitiontrees_bootstrap
                        Coerce a context tree Bootstrap to a Tidy Data
                        Frame
as.data.frame.transitiontrees_comparison
                        Coerce a context tree Comparison to a Tidy Data
                        Frame
as.data.frame.transitiontrees_group
                        Coerce a Group of Trees to One Tidy Data Frame
as.data.frame.transitiontrees_group_comparison
                        Coerce a Group Comparison to a Tidy Data Frame
bootstrap_pathways      Bootstrap Pathway Stability and Informativeness
common_pathways         Most Common Pathways in a Fitted Tree
compare_groups          Compare Groups of Sequences for Structural
                        Differences
compare_pruning         Compare Pruning Criteria on One Tree
compare_smoothing       Compare Smoothing Schemes on One Dataset
compare_trees           Compare Two context trees by Symmetric
                        Divergence with Permutation Test
context_tree            Fit a Prediction Suffix Tree from Categorical
                        Sequence Data
divergent_pathways      Most Predictively Divergent Pathways
engagement              Student engagement state sequences (wide
                        format)
generate_sequences      Sample Sequences from a Fitted Context Tree
group_regulation_long   Collaborative-regulation events (long format)
impute_sequences        Impute Missing States in Sequences
logLik.transitiontrees
                        Log-Likelihood of a context tree
mine_contexts           Mine Contexts by Next-State Probability
mine_sequences          Mine Sequences by Predictive Surprise
model_fit               Model-Fit Scalars in One Call
n_nodes                 Number of Contexts (Nodes) in a Tree
nobs.transitiontrees    Number of Observations Used to Fit a context
                        tree
pathway_exists          Test Whether a Pathway Exists in the Tree
perplexity              Perplexity of a context tree
plot.transitiontrees    Plot a Context Tree
plot.transitiontrees_bootstrap
                        Plot a context tree Bootstrap
plot.transitiontrees_comparison
                        Plot a context tree Comparison
plot.transitiontrees_group
                        Plot Each Tree in a context tree Group
plot.transitiontrees_group_comparison
                        Plot a Group Comparison
plot.transitiontrees_tune
                        Plot a context tree CV Grid
plot_difference         Difference (Subtraction) Map Between Two Groups
plot_distributions      Per-Context Next-State Distributions
plot_divergence         Lollipop Chart of Pathway Divergence
plot_pathway_resamples
                        Plot Bootstrap Resample Distributions per
                        Pathway
plot_pathways           Plot Pathways as a Probability Heatmap
plot_predictive         Predictive Diagnostics for Held-Out Scoring
plot_pruning            Illustrate Pruning Along a Pathway's Suffix
                        Chain
plot_trajectories       Forward Trajectory Tree (Prefix Tree)
predict.transitiontrees
                        Predict Next-State Probabilities from a Context
                        Tree
prepare_input           Reshape Long Event Data into a Wide Sequence
                        Frame
print.summary.transitiontrees
                        Print a Context-Tree Summary
print.transitiontrees   Print a Context Tree
print.transitiontrees_bootstrap
                        Print a context tree Bootstrap
print.transitiontrees_comparison
                        Print a context tree Comparison
print.transitiontrees_group
                        Print a Group of Context Trees
print.transitiontrees_group_comparison
                        Print a Group Comparison
print.transitiontrees_tune
                        Print a context tree Tuning Grid
prune_tree              Prune a Context Tree
query_pathway           Query the Probability of a Specific Pathway ->
                        Next State
score_positions         Per-Position Scoring
score_sequences         Per-Sequence Scoring
sharp_pathways          Sharpest Pathways
simulate.transitiontrees
                        Simulate Sequences from a Fitted context tree
smooth_tree             Re-Smooth a Fitted context tree
subtree                 Extract the Subtree Rooted at a Pathway
summary.transitiontrees
                        Summary of a Context Tree
summary.transitiontrees_bootstrap
                        Summarise a context tree Bootstrap
summary.transitiontrees_group_comparison
                        Summarise a Group Comparison
trajectories            Student engagement trajectories
tree_dependence         Per-Context Path Dependence of a Context Tree
tree_distance           Symmetric KL Distance Between Two context trees
tree_pathways           Pathways from a Fitted Tree
tune_tree               Cross-Validated Hyperparameter Tuning for
                        context trees
