Package: ggDNAvis
Title: 'ggplot2'-Based Tools for Visualising DNA Sequences and
        Modifications
Version: 1.0.0
Authors@R: 
    person(
        "Evelyn", "Jade", 
        email = "evelynjade42@gmail.com", 
        role = c("aut", "cre", "cph"),
        comment = c(ORCID = "0009-0003-7761-5425")
    )
Description: Uses 'ggplot2' to visualise either (a) a single DNA/RNA sequence split across multiple lines, (b) multiple DNA/RNA sequences, each occupying a whole line, or (c) base modifications such as DNA methylation called by modified bases models in Dorado or Guppy. Functions starting with visualise_<>() are the main plotting functions, and functions starting with extract_and_sort_<>() are key helper functions for reading files and reformatting data. Source code is available at <https://github.com/ejade42/ggDNAvis>, a full non-expert user guide is available at <https://ejade42.github.io/ggDNAvis/>, and an interactive web-app version of the software is available at <https://ejade42.github.io/ggDNAvis/articles/interactive_app.html>.
Imports: cli, dplyr, ggnewscale, ggplot2 (>= 4.0.0), grid, magick, png,
        ragg, rlang, stats, stringr, tidyr, utils
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.3
Suggests: bslib, colourpicker, jsonlite, knitr, markdown, rmarkdown,
        shiny, shinyjs, testthat (>= 3.0.0)
Config/testthat/edition: 3
Depends: R (>= 3.5)
LazyData: true
Language: en-GB
URL: https://ejade42.github.io/ggDNAvis/,
        https://github.com/ejade42/ggDNAvis,
        https://doi.org/10.64898/2026.03.02.708895
BugReports: https://github.com/ejade42/ggDNAvis/issues
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2026-03-06 01:29:23 UTC; evelyn
Author: Evelyn Jade [aut, cre, cph] (ORCID:
    <https://orcid.org/0009-0003-7761-5425>)
Maintainer: Evelyn Jade <evelynjade42@gmail.com>
Repository: CRAN
Date/Publication: 2026-03-06 03:10:02 UTC
Built: R 4.6.0; ; 2026-04-15 04:02:36 UTC; windows
