# Simple Transcriptome Meta-Analysis for Identifying Stress-Responsive Genes

## Documentation for package ‘SRscore’ version 0.1.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

calcSRratio | Calculate the Stress Response ratio (SRratio)
calcSRscore | Create a Data Frame of SRscore
directly_calcSRscore | Aggregate the results of the three functions into a single list
expand_by_group | Create a data frame from all combinations between two specified variables within each group
find_diffexp | Find the expression ratio for each experimental sample for the specified gene.
HNscore | Reproducing HN-scores from HN-ratios Using the SRscore Package
logHNratioHypoxia | Reproducing HN-scores from HN-ratios Using the SRscore Package
MetadataABA | Metadata of abscisic acid stress microarray dataset in _Arabidopsis thaliana_
MetadataHypoxia | Metadata of Hypoxia stress RNA-Seq dataset in _Arabidopsis thaliana_
plot_SRscore_distr | Plot the Distribution of SRscore Values
plot_SRscore_rank | Plot Ranked SRscore Values with Threshold-Based Highlighting
plot_SRscore_top | Barplot of Top Genes Ranked by Absolute SRscore
sample_pair_test | Test data to create data frames from all combinations between two specified variables within each group using sample data
SRGA | Test data for the SRscore package
SRratio_test | Test data for calculating SRratio using sample data
SRscore_test | Test data for calculating SRscore using sample data
TPMHypoxia | Hypoxia stress RNA-Seq data in _Arabidopsis thaliana_
TranscriptomeABA | Abscisic acid stress microarray dataset in _Arabidopsis thaliana_